Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 110.99808 * 2 1 4 4 C 1.46905 * 110.99762 * 123.95060 * 2 1 3 5 5 C 1.52998 * 109.47251 * 66.04880 * 4 2 1 6 6 C 1.52999 * 109.47155 * 179.97438 * 5 4 2 7 7 H 1.09006 * 109.46670 * 55.00073 * 6 5 4 8 8 C 1.50699 * 109.47017 * 174.99613 * 6 5 4 9 9 H 1.07999 * 119.99921 * 92.98405 * 8 6 5 10 10 C 1.37878 * 120.00417 * 272.98134 * 8 6 5 11 11 N 1.31513 * 119.99864 * 5.11813 * 10 8 6 12 12 Si 1.86800 * 120.00248 * 185.11377 * 10 8 6 13 13 H 1.48501 * 109.46881 * 60.00196 * 12 10 8 14 14 H 1.48495 * 109.47058 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46909 * 300.00314 * 12 10 8 16 16 C 1.52998 * 109.47268 * 295.00048 * 6 5 4 17 17 C 1.53001 * 117.51845 * 105.78502 * 16 6 5 18 18 C 1.52995 * 117.49839 * 174.41338 * 16 6 5 19 19 H 1.09000 * 109.47586 * 296.05021 * 1 2 3 20 20 H 1.09003 * 109.46928 * 56.05045 * 1 2 3 21 21 H 1.09002 * 109.47357 * 176.05051 * 1 2 3 22 22 H 1.09005 * 109.46637 * 183.95060 * 3 2 1 23 23 H 1.09001 * 109.46996 * 303.94744 * 3 2 1 24 24 H 1.08992 * 109.47448 * 63.95182 * 3 2 1 25 25 H 1.08998 * 109.47042 * 306.04479 * 4 2 1 26 26 H 1.09005 * 109.46998 * 186.05004 * 4 2 1 27 27 H 1.08998 * 109.47425 * 59.99834 * 5 4 2 28 28 H 1.09000 * 109.46794 * 299.99960 * 5 4 2 29 29 H 0.97003 * 120.00220 * 179.97438 * 11 10 8 30 30 H 1.08996 * 115.54720 * 320.08235 * 16 6 5 31 31 H 1.09002 * 117.49592 * 214.97531 * 17 16 6 32 32 H 1.09004 * 117.49910 * 359.97438 * 17 16 6 33 33 H 1.08995 * 117.50105 * 359.97187 * 18 16 6 34 34 H 1.08998 * 117.50171 * 144.99981 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9705 6 6 2.1802 -3.0404 2.1551 7 1 1.8159 -2.6056 3.0859 8 6 1.7181 -4.4712 2.0543 9 1 2.3391 -5.2060 1.5635 10 6 0.5025 -4.8424 2.5887 11 7 -0.2984 -3.9312 3.0965 12 14 -0.0071 -6.6396 2.5913 13 1 0.9819 -7.4333 3.3641 14 1 -1.3472 -6.7732 3.2169 15 1 -0.0611 -7.1407 1.1945 16 6 3.7094 -2.9957 2.1355 17 6 4.4039 -2.1049 3.1675 18 6 4.4498 -3.6269 3.3162 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0827 1.3432 -0.0708 23 1 1.5897 1.9163 -0.8525 24 1 1.7043 1.8724 0.9232 25 1 1.5610 -0.3871 2.0628 26 1 3.0797 -0.6610 1.1758 27 1 2.0658 -2.6214 0.0454 28 1 0.5471 -2.3474 0.9324 29 1 -1.1538 -4.1922 3.4721 30 1 4.1695 -3.0780 1.1508 31 1 5.3209 -1.6012 2.8617 32 1 3.7713 -1.5501 3.8605 33 1 3.8475 -4.0737 4.1072 34 1 5.3970 -4.1246 3.1084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = 12.193066 kcal Electronic energy + Delta-G solvation = -12946.443245 eV Core-core repulsion = 10879.622580 eV Total energy + Delta-G solvation = -2066.820665 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.59008 -36.27501 -32.98517 -30.87008 -27.23656 -26.96437 -23.88776 -22.07752 -21.46821 -20.19686 -18.81209 -16.30736 -15.03048 -14.83390 -14.64939 -14.25269 -13.90030 -13.49021 -12.40270 -12.21298 -11.96880 -11.50566 -11.36342 -11.22665 -10.96684 -10.73255 -10.64571 -10.51988 -10.30550 -9.90805 -9.69431 -9.11374 -8.87189 -8.50039 -8.30778 -7.83566 -5.96853 -3.98409 3.35010 3.39490 3.42588 4.45541 4.54255 4.85502 5.35467 5.52602 5.65201 5.68854 5.77852 5.93760 5.96382 6.02411 6.07543 6.14832 6.29472 6.34029 6.43758 6.55398 6.66443 6.84550 6.92070 7.02219 7.21157 7.35639 7.49953 7.69522 7.79300 7.97005 8.03672 8.51110 9.08699 9.64753 11.12224 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.011755 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.762636 B = 2381.347760 C = 3140.284314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.055 3.945 5 C -0.092 4.092 6 C 0.070 3.930 7 H 0.046 0.954 8 C -0.501 4.501 9 H 0.054 0.946 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.888 3.112 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.277 1.277 16 C -0.117 4.117 17 C -0.203 4.203 18 C -0.176 4.176 19 H 0.020 0.980 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.018 0.982 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 6.382 -2.752 7.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.072 4.072 5 C -0.130 4.130 6 C 0.051 3.949 7 H 0.064 0.936 8 C -0.540 4.540 9 H 0.072 0.928 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.136 4.136 17 C -0.240 4.240 18 C -0.213 4.213 19 H 0.039 0.961 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.784 6.176 -3.089 7.874 hybrid contribution -0.594 -0.530 0.827 1.148 sum 3.190 5.646 -2.261 6.868 Atomic orbital electron populations 1.22375 0.87855 1.02856 0.99218 1.62113 1.07851 1.12498 1.44908 1.22340 1.00386 0.90036 0.99565 1.22389 0.98980 0.96196 0.89590 1.21670 1.01490 0.90237 0.99615 1.18428 0.86094 0.95291 0.95064 0.93570 1.21014 1.02796 0.93913 1.36253 0.92807 1.24963 0.96601 0.96988 0.95406 1.69946 1.10054 1.32632 1.40590 0.86731 0.77520 0.85918 0.78267 1.20339 1.21473 1.20305 1.22590 0.98135 1.00565 0.92283 1.22955 1.02131 0.93531 1.05364 1.22706 1.01157 0.94139 1.03336 0.96102 0.92594 0.90436 0.91892 0.92236 0.96342 0.95702 0.91656 0.93763 0.91917 0.93089 0.89977 0.90745 0.89816 0.88955 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.32 60.06 0.56 0.98 16 2 N -0.55 -9.73 5.02 -251.26 -1.26 -10.99 16 3 C 0.03 0.37 9.57 60.06 0.57 0.94 16 4 C 0.06 1.09 4.78 -3.82 -0.02 1.07 16 5 C -0.09 -2.09 4.59 -26.73 -0.12 -2.21 16 6 C 0.07 1.72 1.83 -91.77 -0.17 1.55 16 7 H 0.05 1.26 7.44 -51.93 -0.39 0.87 16 8 C -0.50 -13.61 8.09 -34.44 -0.28 -13.89 16 9 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 10 C 0.06 1.70 5.45 -17.82 -0.10 1.60 16 11 N -0.89 -25.64 12.98 55.43 0.72 -24.92 16 12 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.12 -2.47 4.11 -90.62 -0.37 -2.84 16 17 C -0.20 -3.72 9.86 -26.73 -0.26 -3.99 16 18 C -0.18 -3.46 10.02 -26.74 -0.27 -3.73 16 19 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 20 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 21 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 22 H 0.06 0.85 8.12 -51.93 -0.42 0.42 16 23 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.06 1.23 7.02 -51.93 -0.36 0.86 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.57 6.55 -51.93 -0.34 1.23 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 33 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -27.90 277.65 -7.87 -35.77 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.04 Total: 0.08 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.45 Total: -20.51 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.54 Total: -35.91 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.90 -7.87 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.966 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds