Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47079 * 2 1 4 4 C 1.50702 * 109.47116 * 119.99800 * 2 1 3 5 5 H 1.08002 * 119.99612 * 120.00392 * 4 2 1 6 6 C 1.37877 * 119.99978 * 300.00234 * 4 2 1 7 7 N 1.31516 * 119.99560 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00121 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46818 * 90.00361 * 8 6 4 10 10 H 1.48498 * 109.47086 * 209.99864 * 8 6 4 11 11 H 1.48495 * 109.47240 * 330.00406 * 8 6 4 12 12 N 1.46903 * 109.47506 * 239.99948 * 2 1 3 13 13 C 1.48537 * 110.99409 * 59.57033 * 12 2 1 14 14 C 1.54945 * 103.22153 * 159.72361 * 13 12 2 15 15 C 1.54595 * 102.92344 * 322.58418 * 14 13 12 16 16 C 1.53000 * 110.31109 * 263.04445 * 15 14 13 17 17 C 1.52994 * 110.31055 * 140.87283 * 15 14 13 18 18 C 1.47895 * 111.00178 * 176.96718 * 12 2 1 19 19 H 1.08997 * 109.47049 * 305.45317 * 1 2 3 20 20 H 1.09005 * 109.47127 * 65.45054 * 1 2 3 21 21 H 1.08995 * 109.46929 * 185.44954 * 1 2 3 22 22 H 0.97004 * 119.99550 * 180.02562 * 7 6 4 23 23 H 1.09001 * 110.66941 * 41.29504 * 13 12 2 24 24 H 1.09000 * 110.81056 * 278.22164 * 13 12 2 25 25 H 1.08999 * 110.72006 * 204.22737 * 14 13 12 26 26 H 1.09004 * 110.87490 * 81.01680 * 14 13 12 27 27 H 1.08993 * 109.46985 * 175.71609 * 16 15 14 28 28 H 1.09001 * 109.46422 * 295.71646 * 16 15 14 29 29 H 1.09002 * 109.47027 * 55.71275 * 16 15 14 30 30 H 1.09004 * 109.47346 * 304.29164 * 17 15 14 31 31 H 1.09005 * 109.47272 * 64.28391 * 17 15 14 32 32 H 1.08996 * 109.47910 * 184.28468 * 17 15 14 33 33 H 1.08998 * 109.91787 * 94.80206 * 18 12 2 34 34 H 1.09000 * 109.91879 * 333.50866 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.5350 -0.0249 -2.4346 14 6 2.5267 -0.5197 -3.5174 15 6 3.8743 -0.5573 -2.7607 16 6 4.6699 0.7218 -3.0288 17 6 4.6845 -1.7856 -3.1797 18 6 3.4963 -0.6493 -1.2706 19 1 -0.3633 0.5961 0.8371 20 1 -0.3634 0.4270 -0.9348 21 1 -0.3633 -1.0230 0.0976 22 1 1.9033 -0.5278 4.4376 23 1 1.5869 1.0590 -2.3318 24 1 0.5185 -0.3394 -2.6714 25 1 2.5712 0.1829 -4.3496 26 1 2.2536 -1.5147 -3.8687 27 1 5.5808 0.7151 -2.4305 28 1 4.9298 0.7729 -4.0861 29 1 4.0655 1.5884 -2.7609 30 1 4.0905 -2.6852 -3.0183 31 1 4.9444 -1.7066 -4.2354 32 1 5.5958 -1.8403 -2.5844 33 1 3.9158 -1.5568 -0.8365 34 1 3.8683 0.2263 -0.7385 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085696645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = -23.775904 kcal Electronic energy + Delta-G solvation = -13333.134623 eV Core-core repulsion = 11264.754227 eV Total energy + Delta-G solvation = -2068.380396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44243 -36.56978 -34.26846 -31.81041 -30.14415 -28.15950 -27.17520 -25.81310 -23.25535 -21.20421 -19.84897 -18.74421 -17.15500 -16.47344 -16.06285 -15.10435 -14.83332 -14.71404 -14.46039 -13.91804 -13.83202 -13.68742 -13.43168 -12.82111 -12.75725 -12.41101 -12.35348 -12.09520 -11.97647 -11.56028 -11.44650 -11.31984 -11.29716 -11.08915 -10.75404 -9.07588 -8.31307 -6.34404 1.26966 1.31521 1.41935 2.28844 3.02048 3.32106 3.69306 3.82395 4.01833 4.42730 4.44040 4.49493 4.54796 4.62405 4.66916 4.77461 4.84056 4.89909 4.92028 4.97280 5.00151 5.11437 5.14729 5.23235 5.33067 5.40026 5.44235 5.57853 5.63843 6.01505 6.28920 6.65514 6.71579 7.30509 8.85770 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048126 B = 0.010958 C = 0.010097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.670137 B = 2554.654611 C = 2772.349168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.177 3.823 3 H -0.013 1.013 4 C -0.507 4.507 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.263 1.263 10 H -0.296 1.296 11 H -0.254 1.254 12 N -0.520 5.520 13 C 0.027 3.973 14 C -0.103 4.103 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.128 4.128 18 C 0.062 3.938 19 H 0.035 0.965 20 H 0.065 0.935 21 H 0.052 0.948 22 H 0.266 0.734 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 4.061 -15.265 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.069 3.931 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.052 0.948 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.188 1.188 10 H -0.223 1.223 11 H -0.179 1.179 12 N -0.245 5.245 13 C -0.101 4.101 14 C -0.140 4.140 15 C -0.080 4.080 16 C -0.189 4.189 17 C -0.185 4.185 18 C -0.066 4.066 19 H 0.053 0.947 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.676 3.519 -15.036 15.457 hybrid contribution -0.042 1.159 1.118 1.611 sum 0.635 4.678 -13.917 14.696 Atomic orbital electron populations 1.22063 0.96645 1.01188 0.99852 1.19704 0.92953 0.91327 0.89164 0.99561 1.21178 1.30863 1.12220 0.90231 0.94781 1.25802 0.97451 1.00067 0.95304 1.70043 1.47754 1.42544 0.98531 0.85822 0.79425 0.79871 0.77098 1.18842 1.22311 1.17862 1.64601 1.07115 1.50968 1.01796 1.23323 1.00099 0.96221 0.90432 1.22591 0.92463 1.02295 0.96675 1.21511 0.96406 0.97167 0.92905 1.21844 0.99162 0.95363 1.02523 1.21778 0.99020 0.95911 1.01802 1.22732 0.88815 0.98996 0.96102 0.94685 0.91593 0.92870 0.92489 0.94775 0.89774 0.88899 0.90433 0.92984 0.90080 0.93737 0.93274 0.90415 0.93102 0.93528 0.96291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.57 71.98 0.62 -5.48 16 2 C 0.18 8.68 1.34 44.17 0.06 8.74 16 3 H -0.01 -0.66 7.04 -2.39 -0.02 -0.67 16 4 C -0.51 -30.12 8.72 25.60 0.22 -29.89 16 5 H 0.03 2.27 7.69 -2.91 -0.02 2.25 16 6 C 0.01 0.65 5.45 84.65 0.46 1.11 16 7 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 8 Si 0.95 46.08 24.32 68.60 1.67 47.75 16 9 H -0.26 -12.01 6.92 99.48 0.69 -11.32 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.25 -11.57 6.53 99.48 0.65 -10.92 16 12 N -0.52 -22.27 5.10 -862.22 -4.40 -26.67 16 13 C 0.03 0.88 5.39 86.65 0.47 1.34 16 14 C -0.10 -2.65 6.16 31.80 0.20 -2.45 16 15 C -0.08 -2.26 0.97 -51.30 -0.05 -2.31 16 16 C -0.13 -3.21 8.21 71.98 0.59 -2.62 16 17 C -0.13 -3.16 8.23 71.98 0.59 -2.56 16 18 C 0.06 2.50 5.14 86.45 0.44 2.94 16 19 H 0.03 1.54 3.43 -2.39 -0.01 1.53 16 20 H 0.07 2.37 6.65 -2.38 -0.02 2.36 16 21 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 23 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 24 H 0.08 2.53 7.53 -2.39 -0.02 2.51 16 25 H 0.09 1.87 7.85 -2.39 -0.02 1.85 16 26 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.30 8.11 -2.38 -0.02 1.28 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.05 2.07 7.54 -2.39 -0.02 2.05 16 34 H 0.02 0.83 7.23 -2.39 -0.02 0.81 16 Total: -1.00 -67.27 258.19 2.14 -65.13 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.97 Total: 5.34 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.60 Total: -31.19 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -4.10 Total: -87.04 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.67 Total: 47.75 kcal Total: -67.27 2.14 -65.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085696645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.354 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds