Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47336 * 2 1 4 4 C 1.50702 * 109.46731 * 240.00173 * 2 1 3 5 5 H 1.07997 * 119.99962 * 239.99697 * 4 2 1 6 6 C 1.37882 * 119.99846 * 60.00284 * 4 2 1 7 7 N 1.31511 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46888 * 89.99966 * 8 6 4 10 10 H 1.48501 * 109.47495 * 210.00153 * 8 6 4 11 11 H 1.48501 * 109.47135 * 330.00211 * 8 6 4 12 12 N 1.46900 * 109.47479 * 120.00705 * 2 1 3 13 13 C 1.48720 * 111.01831 * 184.48708 * 12 2 1 14 14 C 1.54381 * 104.51692 * 158.96284 * 13 12 2 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 C 1.53002 * 110.32776 * 118.84533 * 15 14 13 17 17 C 1.53011 * 110.32060 * 241.05091 * 15 14 13 18 18 C 1.48567 * 110.99718 * 299.99690 * 12 2 1 19 19 H 1.08994 * 109.47426 * 59.99160 * 1 2 3 20 20 H 1.08996 * 109.47736 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46770 * 299.99985 * 1 2 3 22 22 H 0.97002 * 120.00108 * 179.97438 * 7 6 4 23 23 H 1.09004 * 110.38960 * 40.24251 * 13 12 2 24 24 H 1.08996 * 110.50963 * 277.74694 * 13 12 2 25 25 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 26 26 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 27 27 H 1.08999 * 109.46787 * 61.44886 * 16 15 14 28 28 H 1.08998 * 109.47221 * 181.45249 * 16 15 14 29 29 H 1.08996 * 109.46887 * 301.45306 * 16 15 14 30 30 H 1.08998 * 109.46646 * 58.54619 * 17 15 14 31 31 H 1.08998 * 109.46970 * 178.54521 * 17 15 14 32 32 H 1.08991 * 109.47031 * 298.54602 * 17 15 14 33 33 H 1.08999 * 110.41133 * 82.17552 * 18 12 2 34 34 H 1.09001 * 110.41003 * 319.73948 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3222 -1.1193 -4.0081 9 1 1.3444 -2.1612 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6305 -1.7565 -3.7122 12 7 2.0197 -0.6926 1.1993 13 6 3.5024 -0.6193 1.2896 14 6 3.8125 -0.8751 2.7801 15 6 2.5249 -0.4816 3.5330 16 6 1.9558 -1.6895 4.2801 17 6 2.8085 0.6627 4.5085 18 6 1.5434 -0.0190 2.4349 19 1 -0.3634 0.5139 -0.8898 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.7086 1.1615 -3.4843 23 1 3.8525 0.3693 0.9927 24 1 3.9613 -1.3885 0.6684 25 1 4.6464 -0.2532 3.1055 26 1 4.0400 -1.9283 2.9441 27 1 2.6810 -2.0360 5.0163 28 1 1.0336 -1.4027 4.7854 29 1 1.7474 -2.4902 3.5706 30 1 3.2007 1.5189 3.9599 31 1 1.8853 0.9466 5.0136 32 1 3.5413 0.3374 5.2468 33 1 0.5284 -0.3365 2.6738 34 1 1.5863 1.0639 2.3181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085696646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = -11.531686 kcal Electronic energy + Delta-G solvation = -13246.003345 eV Core-core repulsion = 11178.153898 eV Total energy + Delta-G solvation = -2067.849447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.80019 -34.67419 -32.19855 -29.91965 -27.65945 -27.04386 -25.52213 -24.16496 -21.28195 -19.42070 -18.48690 -16.22700 -15.16838 -14.75693 -14.11526 -13.58101 -13.34383 -13.10042 -12.70705 -12.30540 -12.11966 -11.68618 -11.26034 -11.12725 -11.05143 -10.88345 -10.59605 -10.32330 -10.19141 -10.10855 -9.98655 -9.85148 -9.66913 -8.85169 -8.38608 -7.23597 -5.97239 -4.01369 3.33161 3.39144 3.42827 4.44415 4.98678 5.04353 5.16882 5.33144 5.48288 5.75059 5.80018 5.83300 5.94866 6.01931 6.06481 6.20503 6.33214 6.37415 6.54298 6.54451 6.69359 6.75585 6.80315 6.88317 7.09631 7.14107 7.52942 7.67484 7.87365 8.20113 8.37210 8.61625 9.05437 9.63492 11.09715 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057252 B = 0.009531 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.950279 B = 2937.092554 C = 3140.716235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.201 3.799 3 H -0.001 1.001 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.504 5.504 13 C 0.048 3.952 14 C -0.117 4.117 15 C -0.074 4.074 16 C -0.129 4.129 17 C -0.136 4.136 18 C 0.043 3.957 19 H 0.084 0.916 20 H 0.033 0.967 21 H 0.006 0.994 22 H 0.260 0.740 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -1.449 10.516 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.095 3.905 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.229 5.229 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.074 4.074 16 C -0.186 4.186 17 C -0.193 4.193 18 C -0.085 4.085 19 H 0.103 0.897 20 H 0.052 0.948 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.669 -1.879 10.307 10.812 hybrid contribution 0.514 0.508 -0.921 1.170 sum 3.183 -1.371 9.387 10.006 Atomic orbital electron populations 1.21795 0.97724 0.99562 0.99871 1.19422 0.92467 0.91989 0.86637 0.98380 1.21113 1.30754 1.12135 0.89733 0.92089 1.24943 0.95310 0.95103 0.99023 1.69895 1.37147 1.23105 1.23316 0.86520 0.79220 0.79283 0.82506 1.20695 1.21373 1.19959 1.65494 1.04979 1.50439 1.01960 1.22853 0.90995 0.99993 0.94162 1.22495 0.96180 1.00875 0.95997 1.21330 0.95820 0.95235 0.95050 1.21782 0.99663 0.97749 0.99416 1.21872 1.00915 0.97894 0.98646 1.23115 0.98073 0.96259 0.91096 0.89724 0.94764 0.97493 0.93057 0.94806 0.90765 0.92387 0.91746 0.93536 0.93311 0.91835 0.92889 0.92963 0.93062 0.91249 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.83 37.16 0.33 -3.00 16 2 C 0.20 5.26 1.83 -68.86 -0.13 5.14 16 3 H 0.00 -0.04 7.98 -51.93 -0.41 -0.45 16 4 C -0.50 -14.03 8.16 -34.44 -0.28 -14.31 16 5 H 0.06 1.72 7.25 -52.49 -0.38 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -26.02 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.50 -11.29 5.19 -223.26 -1.16 -12.44 16 13 C 0.05 0.98 5.83 -2.09 -0.01 0.97 16 14 C -0.12 -1.88 6.29 -25.35 -0.16 -2.04 16 15 C -0.07 -1.14 1.03 -153.12 -0.16 -1.30 16 16 C -0.13 -1.78 8.24 37.16 0.31 -1.48 16 17 C -0.14 -1.78 8.24 37.16 0.31 -1.47 16 18 C 0.04 0.82 4.44 -2.18 -0.01 0.81 16 19 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 20 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.01 0.14 6.94 -51.93 -0.36 -0.22 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.72 7.91 -51.93 -0.41 0.30 16 24 H 0.07 1.54 7.65 -51.93 -0.40 1.15 16 25 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 26 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.31 7.39 -51.93 -0.38 0.92 16 34 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 LS Contribution 265.10 15.07 3.99 3.99 Total: -1.00 -28.81 265.10 -7.41 -36.22 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.95 Total: -3.91 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 0.10 Total: -15.17 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.53 Total: -37.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.81 -7.41 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085696646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.689 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds