Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47336 * 2 1 4 4 C 1.50702 * 109.46731 * 240.00173 * 2 1 3 5 5 H 1.07997 * 119.99962 * 239.99697 * 4 2 1 6 6 C 1.37882 * 119.99846 * 60.00284 * 4 2 1 7 7 N 1.31511 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46888 * 89.99966 * 8 6 4 10 10 H 1.48501 * 109.47495 * 210.00153 * 8 6 4 11 11 H 1.48501 * 109.47135 * 330.00211 * 8 6 4 12 12 N 1.46900 * 109.47479 * 120.00705 * 2 1 3 13 13 C 1.48720 * 111.01831 * 184.48708 * 12 2 1 14 14 C 1.54381 * 104.51692 * 158.96284 * 13 12 2 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 C 1.53002 * 110.32776 * 118.84533 * 15 14 13 17 17 C 1.53011 * 110.32060 * 241.05091 * 15 14 13 18 18 C 1.48567 * 110.99718 * 299.99690 * 12 2 1 19 19 H 1.08994 * 109.47426 * 59.99160 * 1 2 3 20 20 H 1.08996 * 109.47736 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46770 * 299.99985 * 1 2 3 22 22 H 0.97002 * 120.00108 * 179.97438 * 7 6 4 23 23 H 1.09004 * 110.38960 * 40.24251 * 13 12 2 24 24 H 1.08996 * 110.50963 * 277.74694 * 13 12 2 25 25 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 26 26 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 27 27 H 1.08999 * 109.46787 * 61.44886 * 16 15 14 28 28 H 1.08998 * 109.47221 * 181.45249 * 16 15 14 29 29 H 1.08996 * 109.46887 * 301.45306 * 16 15 14 30 30 H 1.08998 * 109.46646 * 58.54619 * 17 15 14 31 31 H 1.08998 * 109.46970 * 178.54521 * 17 15 14 32 32 H 1.08991 * 109.47031 * 298.54602 * 17 15 14 33 33 H 1.08999 * 110.41133 * 82.17552 * 18 12 2 34 34 H 1.09001 * 110.41003 * 319.73948 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3222 -1.1193 -4.0081 9 1 1.3444 -2.1612 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6305 -1.7565 -3.7122 12 7 2.0197 -0.6926 1.1993 13 6 3.5024 -0.6193 1.2896 14 6 3.8125 -0.8751 2.7801 15 6 2.5249 -0.4816 3.5330 16 6 1.9558 -1.6895 4.2801 17 6 2.8085 0.6627 4.5085 18 6 1.5434 -0.0190 2.4349 19 1 -0.3634 0.5139 -0.8898 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.7086 1.1615 -3.4843 23 1 3.8525 0.3693 0.9927 24 1 3.9613 -1.3885 0.6684 25 1 4.6464 -0.2532 3.1055 26 1 4.0400 -1.9283 2.9441 27 1 2.6810 -2.0360 5.0163 28 1 1.0336 -1.4027 4.7854 29 1 1.7474 -2.4902 3.5706 30 1 3.2007 1.5189 3.9599 31 1 1.8853 0.9466 5.0136 32 1 3.5413 0.3374 5.2468 33 1 0.5284 -0.3365 2.6738 34 1 1.5863 1.0639 2.3181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085696646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = -29.649877 kcal Electronic energy + Delta-G solvation = -13246.789009 eV Core-core repulsion = 11178.153898 eV Total energy + Delta-G solvation = -2068.635111 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31652 -36.46301 -34.09193 -31.62888 -29.39100 -28.09737 -27.46296 -25.86771 -22.95059 -21.32652 -19.83320 -18.32382 -17.00652 -16.36568 -15.84457 -15.06358 -14.92016 -14.42338 -14.38284 -13.86530 -13.56074 -13.21200 -13.08355 -12.79962 -12.61313 -12.51856 -12.33208 -12.17867 -12.01026 -11.66700 -11.39015 -11.34326 -11.28879 -10.92479 -10.54141 -9.07987 -8.13416 -6.25759 1.40219 1.41186 1.51717 2.40777 3.14129 3.46696 3.72068 3.86924 4.10545 4.43897 4.50940 4.56834 4.73323 4.77068 4.85373 4.88734 4.90463 4.96421 5.02508 5.09611 5.14578 5.18935 5.27990 5.34783 5.42875 5.46369 5.57858 5.69479 5.74978 6.21808 6.33997 6.64081 6.88097 7.43594 8.92813 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057252 B = 0.009531 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.950279 B = 2937.092554 C = 3140.716235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.206 3.794 3 H -0.040 1.040 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.515 5.515 13 C 0.044 3.956 14 C -0.107 4.107 15 C -0.069 4.069 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.040 3.960 19 H 0.060 0.940 20 H 0.030 0.970 21 H 0.026 0.974 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -2.307 11.868 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H -0.022 1.022 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.239 5.239 13 C -0.084 4.084 14 C -0.145 4.145 15 C -0.070 4.070 16 C -0.182 4.182 17 C -0.189 4.189 18 C -0.088 4.088 19 H 0.079 0.921 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.360 -2.742 11.678 12.458 hybrid contribution 0.290 0.801 -1.321 1.571 sum 3.650 -1.941 10.358 11.152 Atomic orbital electron populations 1.21608 0.97307 0.99140 0.99651 1.19220 0.92784 0.90040 0.88107 1.02210 1.21356 1.31069 1.12167 0.91025 0.92778 1.25761 0.95389 0.95790 1.02027 1.70021 1.37837 1.24207 1.24099 0.85486 0.78847 0.78235 0.78647 1.20012 1.20742 1.19343 1.65402 1.06441 1.50184 1.01871 1.22883 0.89622 0.98509 0.97380 1.22471 0.97281 1.02262 0.92513 1.21356 0.94241 0.96945 0.94460 1.21743 1.00876 0.96199 0.99344 1.21835 1.02173 0.96471 0.98379 1.23220 0.99316 0.95313 0.90989 0.92125 0.95056 0.95457 0.92882 0.96711 0.92025 0.90201 0.90376 0.91017 0.92209 0.93618 0.93767 0.91937 0.90577 0.91155 0.96308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.83 71.98 0.64 -5.50 16 2 C 0.21 11.09 1.83 44.17 0.08 11.18 16 3 H -0.04 -2.38 7.98 -2.39 -0.02 -2.40 16 4 C -0.52 -29.79 8.16 25.60 0.21 -29.58 16 5 H 0.05 3.11 7.25 -2.91 -0.02 3.09 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -54.62 11.32 21.45 0.24 -54.37 16 8 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.51 -23.29 5.19 -860.26 -4.46 -27.76 16 13 C 0.04 1.81 5.83 86.42 0.50 2.31 16 14 C -0.11 -3.21 6.29 31.49 0.20 -3.01 16 15 C -0.07 -1.98 1.03 -51.28 -0.05 -2.03 16 16 C -0.12 -3.04 8.24 71.98 0.59 -2.45 16 17 C -0.13 -3.01 8.24 71.99 0.59 -2.42 16 18 C 0.04 1.50 4.44 86.45 0.38 1.88 16 19 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 20 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.03 1.24 6.94 -2.39 -0.02 1.22 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.01 0.64 7.91 -2.38 -0.02 0.62 16 24 H 0.06 2.60 7.65 -2.39 -0.02 2.59 16 25 H 0.08 2.05 7.71 -2.39 -0.02 2.04 16 26 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 2.59 7.39 -2.39 -0.02 2.57 16 34 H 0.02 0.75 7.68 -2.39 -0.02 0.73 16 Total: -1.00 -62.52 265.10 2.43 -60.08 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.03 Total: 3.86 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 3.59 Total: -28.68 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -4.22 Total: -82.13 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.52 2.43 -60.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085696646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.433 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds