Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46954 * 2 1 4 4 C 1.53006 * 109.47111 * 119.99590 * 2 1 3 5 5 C 1.53936 * 113.82810 * 81.32836 * 4 2 1 6 6 N 1.47960 * 86.18161 * 138.09100 * 5 4 2 7 7 C 1.46897 * 111.00044 * 222.41548 * 6 5 4 8 8 H 1.09007 * 109.47251 * 39.35900 * 7 6 5 9 9 C 1.52998 * 109.47369 * 159.35628 * 7 6 5 10 10 C 1.50699 * 109.47208 * 279.36107 * 7 6 5 11 11 H 1.07999 * 120.00128 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99744 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99534 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00407 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47079 * 89.99746 * 14 12 10 16 16 H 1.48502 * 109.47039 * 210.00008 * 14 12 10 17 17 H 1.48503 * 109.46655 * 329.99995 * 14 12 10 18 18 C 1.47965 * 90.76281 * 335.30916 * 6 5 4 19 19 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47343 * 300.00283 * 1 2 3 21 21 H 1.08994 * 109.47362 * 60.00102 * 1 2 3 22 22 H 1.09000 * 109.47343 * 239.99717 * 2 1 3 23 23 H 1.09001 * 109.46755 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.46837 * 299.99633 * 3 2 1 25 25 H 1.09000 * 109.47327 * 59.99707 * 3 2 1 26 26 H 1.09002 * 112.94026 * 309.66780 * 4 2 1 27 27 H 1.09001 * 113.76032 * 252.40731 * 5 4 2 28 28 H 1.09002 * 113.76092 * 23.76789 * 5 4 2 29 29 H 1.09007 * 109.46712 * 59.99942 * 9 7 6 30 30 H 1.08995 * 109.47125 * 179.97438 * 9 7 6 31 31 H 1.08999 * 109.47356 * 300.00385 * 9 7 6 32 32 H 0.97000 * 119.99658 * 180.02562 * 13 12 10 33 33 H 1.08999 * 113.75581 * 270.37620 * 18 6 5 34 34 H 1.08997 * 113.85587 * 139.02154 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0471 -2.2553 1.1225 6 7 3.3639 -2.2060 1.7955 7 6 4.3149 -3.1275 1.1598 8 1 4.1793 -3.1007 0.0785 9 6 5.7440 -2.7039 1.5052 10 6 4.0705 -4.5271 1.6621 11 1 3.2872 -4.7134 2.3820 12 6 4.8468 -5.5698 1.2026 13 7 4.6331 -6.7913 1.6406 14 14 6.2010 -5.2478 -0.0430 15 1 7.4681 -4.9460 0.6702 16 1 6.3865 -6.4502 -0.8945 17 1 5.8250 -4.0911 -0.8950 18 6 3.5744 -0.8189 1.3253 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.5775 -0.3590 2.1675 27 1 1.2721 -2.7481 1.7095 28 1 2.0931 -2.6107 0.0930 29 1 5.8795 -2.7307 2.5864 30 1 6.4496 -3.3880 1.0338 31 1 5.9208 -1.6916 1.1419 32 1 5.1794 -7.5248 1.3176 33 1 4.0671 -0.7542 0.3551 34 1 4.0198 -0.1628 2.0730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 22.868602 kcal Electronic energy + Delta-G solvation = -13067.133501 eV Core-core repulsion = 11000.775763 eV Total energy + Delta-G solvation = -2066.357739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59337 -35.17027 -33.00379 -30.85245 -27.36193 -26.21713 -25.61020 -24.25335 -21.50529 -19.29610 -19.11524 -16.67984 -15.49090 -14.99472 -14.40706 -14.15503 -13.57428 -13.01845 -12.96147 -12.44857 -12.30547 -12.13781 -11.98149 -11.77600 -11.17360 -11.12892 -10.79267 -10.55108 -10.31905 -10.10962 -9.93822 -9.84024 -9.28614 -9.10611 -8.54041 -7.76268 -6.04693 -4.02519 3.26568 3.35548 3.38335 4.40794 4.71031 4.81022 4.94366 5.18469 5.26557 5.50741 5.59736 5.70375 5.72661 5.90887 5.93550 6.02406 6.07248 6.19530 6.20607 6.26507 6.35067 6.36311 6.37854 6.48407 6.58538 6.74534 6.82332 7.02996 7.45902 7.81085 7.98422 8.66723 9.04414 9.57621 11.08764 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.009367 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.923145 B = 2988.495389 C = 3157.020011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.115 4.115 5 C 0.024 3.976 6 N -0.463 5.463 7 C 0.150 3.850 8 H 0.003 0.997 9 C -0.146 4.146 10 C -0.499 4.499 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.297 1.297 17 H -0.270 1.270 18 C 0.002 3.998 19 H 0.056 0.944 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 13.750 -4.069 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.133 4.133 5 C -0.105 4.105 6 N -0.185 5.185 7 C 0.042 3.958 8 H 0.021 0.979 9 C -0.204 4.204 10 C -0.538 4.538 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.224 1.224 17 H -0.196 1.196 18 C -0.128 4.128 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.212 13.371 -3.381 14.421 hybrid contribution 0.954 0.043 -1.541 1.812 sum -3.259 13.415 -4.921 14.656 Atomic orbital electron populations 1.21784 0.95361 1.01828 1.01100 1.21155 0.95666 0.96034 0.98086 1.21787 1.01127 0.96032 1.01131 1.23135 0.96212 0.96136 0.97864 1.23717 0.94665 0.93812 0.98339 1.68498 1.02509 1.00612 1.46904 1.20219 0.89150 0.93829 0.92641 0.97923 1.22161 0.98570 0.97684 1.01958 1.20898 1.18572 0.88500 1.25803 0.90218 1.24946 0.97200 0.95042 0.96144 1.69889 1.40399 0.99484 1.44150 0.86875 0.82821 0.76836 0.81739 1.20572 1.22431 1.19557 1.23834 0.95286 0.94580 0.99056 0.92474 0.92880 0.93245 0.91447 0.92661 0.93245 0.92849 0.89083 0.90396 0.91926 0.92166 0.94027 0.95339 0.92677 0.92414 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 2 C -0.09 -1.14 2.66 -90.62 -0.24 -1.38 16 3 C -0.14 -1.57 9.02 37.16 0.34 -1.23 16 4 C -0.11 -1.73 3.28 -89.68 -0.29 -2.02 16 5 C 0.02 0.45 7.30 -2.77 -0.02 0.43 16 6 N -0.46 -9.96 5.97 -231.67 -1.38 -11.34 16 7 C 0.15 3.68 1.30 -68.87 -0.09 3.59 16 8 H 0.00 0.08 6.68 -51.93 -0.35 -0.26 16 9 C -0.15 -3.34 8.57 37.16 0.32 -3.02 16 10 C -0.50 -14.51 9.19 -34.44 -0.32 -14.83 16 11 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 12 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 13 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 14 Si 0.89 22.43 24.38 -169.99 -4.14 18.28 16 15 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 18 C 0.00 0.03 5.42 -2.76 -0.01 0.01 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 23 H 0.05 0.62 7.51 -51.93 -0.39 0.23 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.06 1.21 7.47 -51.93 -0.39 0.82 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 31 H 0.03 0.55 7.02 -51.93 -0.36 0.19 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.06 0.99 7.61 -51.93 -0.40 0.59 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -30.55 263.37 -6.74 -37.29 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.88 Total: -3.12 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.08 Total: -17.79 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.61 Total: -38.63 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.28 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.55 -6.74 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.158 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds