Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46954 * 2 1 4 4 C 1.53006 * 109.47111 * 119.99590 * 2 1 3 5 5 C 1.53936 * 113.82810 * 81.32836 * 4 2 1 6 6 N 1.47960 * 86.18161 * 138.09100 * 5 4 2 7 7 C 1.46897 * 111.00044 * 222.41548 * 6 5 4 8 8 H 1.09007 * 109.47251 * 39.35900 * 7 6 5 9 9 C 1.52998 * 109.47369 * 159.35628 * 7 6 5 10 10 C 1.50699 * 109.47208 * 279.36107 * 7 6 5 11 11 H 1.07999 * 120.00128 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99744 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99534 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00407 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47079 * 89.99746 * 14 12 10 16 16 H 1.48502 * 109.47039 * 210.00008 * 14 12 10 17 17 H 1.48503 * 109.46655 * 329.99995 * 14 12 10 18 18 C 1.47965 * 90.76281 * 335.30916 * 6 5 4 19 19 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47343 * 300.00283 * 1 2 3 21 21 H 1.08994 * 109.47362 * 60.00102 * 1 2 3 22 22 H 1.09000 * 109.47343 * 239.99717 * 2 1 3 23 23 H 1.09001 * 109.46755 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.46837 * 299.99633 * 3 2 1 25 25 H 1.09000 * 109.47327 * 59.99707 * 3 2 1 26 26 H 1.09002 * 112.94026 * 309.66780 * 4 2 1 27 27 H 1.09001 * 113.76032 * 252.40731 * 5 4 2 28 28 H 1.09002 * 113.76092 * 23.76789 * 5 4 2 29 29 H 1.09007 * 109.46712 * 59.99942 * 9 7 6 30 30 H 1.08995 * 109.47125 * 179.97438 * 9 7 6 31 31 H 1.08999 * 109.47356 * 300.00385 * 9 7 6 32 32 H 0.97000 * 119.99658 * 180.02562 * 13 12 10 33 33 H 1.08999 * 113.75581 * 270.37620 * 18 6 5 34 34 H 1.08997 * 113.85587 * 139.02154 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0471 -2.2553 1.1225 6 7 3.3639 -2.2060 1.7955 7 6 4.3149 -3.1275 1.1598 8 1 4.1793 -3.1007 0.0785 9 6 5.7440 -2.7039 1.5052 10 6 4.0705 -4.5271 1.6621 11 1 3.2872 -4.7134 2.3820 12 6 4.8468 -5.5698 1.2026 13 7 4.6331 -6.7913 1.6406 14 14 6.2010 -5.2478 -0.0430 15 1 7.4681 -4.9460 0.6702 16 1 6.3865 -6.4502 -0.8945 17 1 5.8250 -4.0911 -0.8950 18 6 3.5744 -0.8189 1.3253 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.5775 -0.3590 2.1675 27 1 1.2721 -2.7481 1.7095 28 1 2.0931 -2.6107 0.0930 29 1 5.8795 -2.7307 2.5864 30 1 6.4496 -3.3880 1.0338 31 1 5.9208 -1.6916 1.1419 32 1 5.1794 -7.5248 1.3176 33 1 4.0671 -0.7542 0.3551 34 1 4.0198 -0.1628 2.0730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 1.118372 kcal Electronic energy + Delta-G solvation = -13068.076662 eV Core-core repulsion = 11000.775763 eV Total energy + Delta-G solvation = -2067.300899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06421 -36.56995 -34.84201 -32.78037 -28.42229 -27.66440 -27.32482 -25.96632 -22.92565 -20.93983 -20.40212 -18.82571 -17.23414 -16.52987 -15.93487 -15.48288 -14.99948 -14.81851 -14.34861 -14.15522 -13.69134 -13.54128 -13.41804 -12.93297 -12.71458 -12.42977 -12.32394 -12.14815 -11.92243 -11.59431 -11.46877 -11.28383 -11.08149 -10.95211 -10.73124 -9.42414 -8.32408 -6.35926 1.26244 1.30909 1.41763 2.27987 3.00807 3.25209 3.55850 3.80284 4.19155 4.35414 4.44311 4.46213 4.50248 4.59197 4.63653 4.65794 4.82912 4.88675 4.89316 4.92417 5.00680 5.05635 5.09265 5.25937 5.29798 5.34818 5.50870 5.57456 5.64935 5.82699 6.08280 6.62207 6.69543 7.28848 8.85074 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.009367 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.923145 B = 2988.495389 C = 3157.020011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.090 4.090 5 C 0.014 3.986 6 N -0.492 5.492 7 C 0.154 3.846 8 H -0.002 1.002 9 C -0.142 4.142 10 C -0.508 4.508 11 H 0.030 0.970 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.953 3.047 15 H -0.264 1.264 16 H -0.295 1.295 17 H -0.251 1.251 18 C 0.005 3.995 19 H 0.045 0.955 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.266 0.734 33 H 0.064 0.936 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 16.438 -5.327 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.108 4.108 5 C -0.115 4.115 6 N -0.215 5.215 7 C 0.045 3.955 8 H 0.015 0.985 9 C -0.200 4.200 10 C -0.546 4.546 11 H 0.048 0.952 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.780 3.220 15 H -0.190 1.190 16 H -0.222 1.222 17 H -0.175 1.175 18 C -0.123 4.123 19 H 0.064 0.936 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.521 16.089 -4.633 17.109 hybrid contribution 0.619 -0.813 -1.068 1.478 sum -2.903 15.277 -5.701 16.562 Atomic orbital electron populations 1.21772 0.94207 1.01543 1.02390 1.21129 0.96645 0.96874 0.96023 1.21758 1.01010 0.94572 1.02362 1.22988 0.95007 0.93149 0.99699 1.23768 0.93351 0.97116 0.97280 1.68429 1.02908 1.02461 1.47696 1.20041 0.91268 0.92064 0.92085 0.98469 1.22066 0.96754 0.99607 1.01557 1.21149 1.17181 0.91603 1.24694 0.95170 1.25855 1.00009 0.94523 0.98389 1.70049 1.42085 1.00725 1.46139 0.85783 0.79707 0.77326 0.79180 1.18967 1.22235 1.17521 1.23932 0.96955 0.91810 0.99639 0.93601 0.91950 0.91638 0.92397 0.92825 0.91762 0.91958 0.88132 0.91663 0.92842 0.92955 0.94610 0.91688 0.92454 0.91786 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.18 71.98 0.66 -2.13 16 2 C -0.09 -1.98 2.66 -10.79 -0.03 -2.00 16 3 C -0.14 -2.53 9.02 71.98 0.65 -1.88 16 4 C -0.09 -2.53 3.28 -10.14 -0.03 -2.56 16 5 C 0.01 0.53 7.30 86.41 0.63 1.16 16 6 N -0.49 -20.96 5.97 -886.86 -5.30 -26.25 16 7 C 0.15 7.50 1.30 44.17 0.06 7.56 16 8 H 0.00 -0.11 6.68 -2.38 -0.02 -0.12 16 9 C -0.14 -6.19 8.57 71.98 0.62 -5.57 16 10 C -0.51 -30.41 9.19 25.60 0.24 -30.18 16 11 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 12 C 0.01 0.55 5.45 84.65 0.46 1.01 16 13 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 14 Si 0.95 45.94 24.38 68.60 1.67 47.61 16 15 H -0.26 -12.03 6.87 99.48 0.68 -11.34 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 18 C 0.01 0.17 5.42 86.41 0.47 0.64 16 19 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.43 7.98 -2.39 -0.02 1.41 16 23 H 0.05 0.99 7.51 -2.39 -0.02 0.98 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 28 H 0.05 2.10 7.47 -2.39 -0.02 2.08 16 29 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 31 H 0.06 2.32 7.02 -2.39 -0.02 2.31 16 32 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.06 1.98 7.61 -2.39 -0.02 1.96 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -67.32 263.37 1.35 -65.97 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.96 Total: 7.35 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 3.72 Total: -33.96 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -5.00 Total: -86.96 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.67 Total: 47.61 kcal Total: -67.32 1.35 -65.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.086 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds