Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.44313 * 110.99515 * 2 1 4 4 C 1.53985 * 108.30746 * 221.34391 * 3 2 1 5 5 C 1.45876 * 112.67150 * 278.59118 * 4 3 2 6 6 C 1.54524 * 111.66711 * 61.50183 * 5 4 3 7 7 H 1.09000 * 109.57584 * 42.70854 * 6 5 4 8 8 C 1.53004 * 109.57274 * 162.96078 * 6 5 4 9 9 C 1.50701 * 109.47211 * 185.00150 * 8 6 5 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 8 6 11 11 C 1.37871 * 119.99694 * 180.27574 * 9 8 6 12 12 N 1.31523 * 119.99908 * 179.72112 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 359.71709 * 11 9 8 14 14 H 1.48500 * 109.47210 * 90.00069 * 13 11 9 15 15 H 1.48504 * 109.47424 * 210.00300 * 13 11 9 16 16 H 1.48502 * 109.46888 * 330.00390 * 13 11 9 17 17 C 1.50542 * 108.86059 * 282.76764 * 6 5 4 18 18 C 1.47938 * 111.00086 * 127.40172 * 2 1 3 19 19 H 1.08995 * 109.47144 * 56.04817 * 1 2 3 20 20 H 1.09005 * 109.46501 * 176.05061 * 1 2 3 21 21 H 1.08994 * 109.47027 * 296.04851 * 1 2 3 22 22 H 1.08997 * 109.69538 * 101.63937 * 3 2 1 23 23 H 1.08996 * 109.69545 * 341.05101 * 3 2 1 24 24 H 1.08997 * 108.83570 * 157.77444 * 4 3 2 25 25 H 1.08993 * 108.84308 * 39.41697 * 4 3 2 26 26 H 1.08996 * 109.04422 * 300.93772 * 5 4 3 27 27 H 1.08998 * 109.04032 * 182.06563 * 5 4 3 28 28 H 1.09000 * 109.47211 * 64.99177 * 8 6 5 29 29 H 1.09007 * 109.46376 * 304.99719 * 8 6 5 30 30 H 0.96995 * 120.00181 * 179.97438 * 12 11 9 31 31 H 1.08997 * 108.78995 * 212.64592 * 17 6 5 32 32 H 1.08997 * 108.78973 * 330.86184 * 17 6 5 33 33 H 1.09002 * 108.71712 * 313.18497 * 18 2 1 34 34 H 1.08996 * 108.71094 * 71.32492 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3473 0.0000 4 6 3.1841 1.4057 -0.9657 5 6 4.4182 0.9167 -0.3608 6 6 4.2993 -0.5654 0.0596 7 1 3.7909 -1.1276 -0.7237 8 6 5.6961 -1.1481 0.2845 9 6 5.5846 -2.6228 0.5741 10 1 4.6145 -3.0969 0.5961 11 6 6.7206 -3.3653 0.8172 12 7 6.6229 -4.6512 1.0754 13 14 8.3985 -2.5450 0.7797 14 1 8.7354 -2.0449 2.1368 15 1 9.4217 -3.5305 0.3471 16 1 8.3721 -1.4075 -0.1745 17 6 3.5074 -0.6468 1.3373 18 6 1.9992 -0.8389 1.0971 19 1 -0.3633 0.5739 -0.8524 20 1 -0.3632 -1.0253 -0.0708 21 1 -0.3633 0.4513 0.9232 22 1 2.3110 1.6161 1.0051 23 1 1.2116 2.0380 -0.3332 24 1 3.3318 2.4385 -1.2812 25 1 2.9584 0.8004 -1.8436 26 1 4.6460 1.5187 0.5188 27 1 5.2311 1.0183 -1.0798 28 1 6.1674 -0.6463 1.1296 29 1 6.3005 -0.9982 -0.6102 30 1 7.4221 -5.1737 1.2461 31 1 3.8784 -1.4846 1.9276 32 1 3.6585 0.2725 1.9031 33 1 1.4650 -0.5930 2.0149 34 1 1.8159 -1.8860 0.8565 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107403085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = -33.462863 kcal Electronic energy + Delta-G solvation = -13140.992104 eV Core-core repulsion = 11072.191650 eV Total energy + Delta-G solvation = -2068.800454 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16629 -36.55924 -34.66404 -33.37844 -30.71372 -28.21221 -26.02146 -25.08457 -23.01336 -21.13878 -20.25213 -18.81312 -16.92517 -16.64728 -16.21638 -15.66336 -14.95978 -14.73129 -14.48151 -14.09847 -13.88888 -13.76360 -13.35866 -12.82071 -12.63940 -12.50871 -12.09733 -11.97529 -11.68467 -11.50316 -11.47011 -11.23877 -10.97873 -10.76563 -10.70570 -9.03457 -8.24933 -6.26482 1.35432 1.37574 1.49800 2.38590 3.06961 3.10572 3.88479 4.07596 4.13257 4.24787 4.30808 4.48527 4.57038 4.61642 4.76884 4.78941 4.85479 4.93101 5.04225 5.13419 5.17955 5.29094 5.30074 5.33082 5.48116 5.55551 5.64704 5.78922 5.86790 6.24214 6.37234 6.45141 6.80948 7.36815 8.91888 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.052678 B = 0.009488 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.407628 B = 2950.509958 C = 3325.862060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.569 5.569 3 C 0.065 3.935 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.058 4.058 7 H 0.048 0.952 8 C -0.008 4.008 9 C -0.516 4.516 10 H 0.034 0.966 11 C 0.000 4.000 12 N -0.954 5.954 13 Si 0.948 3.052 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.249 1.249 17 C -0.105 4.105 18 C 0.074 3.926 19 H 0.081 0.919 20 H 0.061 0.939 21 H 0.029 0.971 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 14.262 -1.677 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.294 5.294 3 C -0.063 4.063 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.077 4.077 7 H 0.067 0.933 8 C -0.045 4.045 9 C -0.554 4.554 10 H 0.052 0.948 11 C -0.196 4.196 12 N -0.596 5.596 13 Si 0.772 3.228 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.173 1.173 17 C -0.143 4.143 18 C -0.053 4.053 19 H 0.100 0.900 20 H 0.080 0.920 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.395 13.923 -2.046 16.387 hybrid contribution 0.600 -0.286 0.903 1.121 sum -7.795 13.637 -1.142 15.750 Atomic orbital electron populations 1.22415 0.85955 1.02277 1.00960 1.60649 1.08285 1.13851 1.46636 1.21845 0.97355 0.88556 0.98572 1.20451 0.94110 1.01089 0.98893 1.20631 0.98459 0.94975 1.00605 1.20636 0.94917 0.95372 0.96778 0.93347 1.19661 0.95245 0.93874 0.95764 1.21465 0.93383 0.94158 1.46364 0.94808 1.26003 1.03685 0.95269 0.94610 1.70079 1.30446 1.08207 1.50829 0.85693 0.78730 0.78894 0.79527 1.19291 1.21137 1.17258 1.21336 0.93671 1.01217 0.98094 1.22234 0.94663 0.96913 0.91534 0.89992 0.92017 0.95203 0.94215 0.89648 0.90345 0.92617 0.92304 0.92713 0.96780 0.96876 0.92743 0.92990 0.92298 0.94430 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.30 127.69 1.19 1.88 16 2 N -0.57 -16.23 4.26 -922.46 -3.93 -20.15 16 3 C 0.06 1.59 5.42 87.12 0.47 2.06 16 4 C -0.11 -2.81 5.37 28.74 0.15 -2.65 16 5 C -0.11 -3.45 4.73 28.93 0.14 -3.31 16 6 C -0.06 -2.36 1.84 -11.07 -0.02 -2.38 16 7 H 0.05 2.17 7.80 -2.39 -0.02 2.15 16 8 C -0.01 -0.39 3.43 29.85 0.10 -0.29 16 9 C -0.52 -30.34 8.55 25.60 0.22 -30.13 16 10 H 0.03 2.19 7.71 -2.91 -0.02 2.17 16 11 C 0.00 0.01 5.47 84.65 0.46 0.48 16 12 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 13 Si 0.95 45.57 27.46 68.60 1.88 47.45 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 16 H -0.25 -11.20 6.55 99.48 0.65 -10.55 16 17 C -0.11 -3.99 4.66 30.11 0.14 -3.85 16 18 C 0.07 2.43 5.44 86.41 0.47 2.90 16 19 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 20 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 21 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.04 0.99 6.79 -2.39 -0.02 0.98 16 23 H 0.09 1.65 7.51 -2.39 -0.02 1.64 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.06 1.73 7.59 -2.39 -0.02 1.71 16 27 H 0.05 1.72 7.96 -2.39 -0.02 1.70 16 28 H 0.01 0.66 7.56 -2.39 -0.02 0.64 16 29 H 0.01 0.63 7.13 -2.38 -0.02 0.61 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.05 2.33 6.62 -2.39 -0.02 2.31 16 32 H 0.06 1.99 6.66 -2.39 -0.02 1.97 16 33 H 0.04 1.10 8.02 -2.39 -0.02 1.09 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.98 258.93 2.56 -63.42 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.98 Total: 5.48 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 3.33 Total: -35.29 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.63 Total: -81.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -65.98 2.56 -63.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.959 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds