Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47629 * 111.00125 * 2 1 4 4 C 1.50814 * 108.04133 * 150.32558 * 3 2 1 5 5 C 1.53820 * 111.61943 * 95.06451 * 4 3 2 6 6 C 1.54166 * 111.96819 * 319.04163 * 5 4 3 7 7 C 1.50749 * 112.61823 * 318.48865 * 6 5 4 8 8 H 1.09002 * 109.54226 * 333.14024 * 7 6 5 9 9 C 1.52999 * 109.54599 * 212.87960 * 7 6 5 10 10 C 1.50696 * 109.47212 * 175.44362 * 9 7 6 11 11 H 1.08000 * 120.00363 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00190 * 179.97438 * 10 9 7 13 13 N 1.31518 * 120.00392 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99905 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47371 * 89.99583 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99802 * 14 12 10 17 17 H 1.48503 * 109.46912 * 329.99625 * 14 12 10 18 18 C 1.39785 * 110.99635 * 231.10252 * 2 1 3 19 19 H 1.08997 * 109.47429 * 188.89763 * 1 2 3 20 20 H 1.08997 * 109.47027 * 308.90115 * 1 2 3 21 21 H 1.09001 * 109.47474 * 68.89724 * 1 2 3 22 22 H 1.08995 * 109.75116 * 269.96131 * 3 2 1 23 23 H 1.09000 * 109.74730 * 30.69218 * 3 2 1 24 24 H 1.09003 * 109.05321 * 215.61495 * 4 3 2 25 25 H 1.08999 * 109.05498 * 334.58391 * 4 3 2 26 26 H 1.09000 * 108.98228 * 79.69013 * 5 4 3 27 27 H 1.09006 * 108.98028 * 198.40369 * 5 4 3 28 28 H 1.09006 * 108.85426 * 79.29953 * 6 5 4 29 29 H 1.09005 * 108.85436 * 197.78109 * 6 5 4 30 30 H 1.09003 * 109.46949 * 295.44262 * 9 7 6 31 31 H 1.08997 * 109.47571 * 55.44392 * 9 7 6 32 32 H 0.96999 * 119.99899 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.01992 * 309.72373 * 18 2 1 34 34 H 1.09001 * 109.02181 * 68.55125 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3286 1.3678 0.7099 5 6 4.4983 1.2353 -0.2803 6 6 4.1922 0.2235 -1.4024 7 6 3.4971 -1.0137 -0.8938 8 1 3.7617 -1.1771 0.1509 9 6 3.9275 -2.2221 -1.7277 10 6 3.3199 -3.4738 -1.1490 11 1 2.6900 -3.4137 -0.2738 12 6 3.5680 -4.6961 -1.7370 13 7 3.0381 -5.7886 -1.2318 14 14 4.6580 -4.8004 -3.2504 15 1 6.0694 -4.9945 -2.8315 16 1 4.2291 -5.9467 -4.0913 17 1 4.5420 -3.5427 -4.0316 18 6 1.9699 -0.8195 -1.0157 19 1 -0.3634 -1.0152 0.1589 20 1 -0.3633 0.6453 0.7997 21 1 -0.3634 0.3700 -0.9587 22 1 2.1307 1.7218 -1.0258 23 1 1.3065 2.0382 0.5236 24 1 3.4403 2.2960 1.2703 25 1 3.3549 0.5280 1.4043 26 1 4.6975 2.2098 -0.7261 27 1 5.3856 0.9067 0.2610 28 1 3.5566 0.7040 -2.1463 29 1 5.1285 -0.0703 -1.8769 30 1 3.5869 -2.0943 -2.7552 31 1 5.0142 -2.3054 -1.7128 32 1 3.2130 -6.6484 -1.6452 33 1 1.4823 -1.7927 -0.9597 34 1 1.7454 -0.3661 -1.9811 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107403087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = -12.414671 kcal Electronic energy + Delta-G solvation = -13213.997335 eV Core-core repulsion = 11146.109599 eV Total energy + Delta-G solvation = -2067.887736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.06002 -34.57379 -33.43842 -31.79730 -28.24770 -27.06801 -24.87644 -23.61244 -21.28769 -19.85354 -18.72451 -16.63070 -15.45697 -15.08628 -14.57353 -14.36674 -13.97181 -13.30469 -12.80899 -12.49613 -12.10392 -11.96879 -11.88498 -11.58591 -11.03611 -10.97131 -10.67263 -10.54723 -10.23320 -9.96832 -9.74126 -9.47587 -9.31534 -8.98751 -8.47206 -7.72423 -5.97844 -3.94366 3.34043 3.41428 3.45451 4.40881 4.50449 5.13643 5.23744 5.35210 5.37586 5.53469 5.63755 5.70356 5.74422 5.86218 5.95848 6.11815 6.15737 6.17105 6.31683 6.36808 6.44631 6.59640 6.69706 6.85090 6.95584 7.06355 7.30839 7.54296 7.63273 7.86774 7.97347 8.62792 9.09411 9.65404 11.15514 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042355 B = 0.010517 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.913804 B = 2661.725711 C = 3079.996291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.556 5.556 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.068 4.068 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.512 4.512 11 H 0.076 0.924 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.081 3.919 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.017 0.983 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 13.772 0.832 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.280 5.280 3 C -0.061 4.061 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.087 4.087 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.550 4.550 11 H 0.094 0.906 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.704 3.296 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.048 4.048 19 H 0.087 0.913 20 H 0.078 0.922 21 H 0.036 0.964 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -0.810 13.382 1.190 13.459 hybrid contribution 0.329 0.102 -1.608 1.645 sum -0.481 13.484 -0.418 13.499 Atomic orbital electron populations 1.22314 0.87672 1.02305 0.99222 1.58879 1.06716 1.11470 1.50903 1.21778 0.96236 0.89029 0.99092 1.21396 0.93823 1.01701 0.98584 1.21904 0.98012 0.98353 0.97003 1.21607 1.00478 0.96246 0.97315 1.20891 0.92798 0.93847 1.01131 0.90801 1.19648 0.95906 0.93693 0.95350 1.21188 1.30254 0.89674 1.13916 0.90626 1.25035 0.95705 0.95835 0.97011 1.69922 1.45176 0.98303 1.41045 0.86830 0.81205 0.77683 0.83855 1.20409 1.21543 1.19121 1.21068 0.96827 0.97203 0.89676 0.91314 0.92196 0.96412 0.94499 0.91858 0.92775 0.90371 0.93291 0.92452 0.93453 0.92542 0.96896 0.96923 0.92903 0.89151 0.97755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.46 60.06 0.57 1.04 16 2 N -0.56 -9.42 4.19 -248.33 -1.04 -10.47 16 3 C 0.07 0.94 5.37 -4.52 -0.02 0.92 16 4 C -0.12 -1.63 5.41 -27.40 -0.15 -1.78 16 5 C -0.12 -1.65 5.91 -25.69 -0.15 -1.80 16 6 C -0.12 -2.03 4.88 -27.25 -0.13 -2.16 16 7 C -0.07 -1.38 1.86 -91.00 -0.17 -1.55 16 8 H 0.07 1.60 7.11 -51.93 -0.37 1.23 16 9 C -0.01 -0.20 3.35 -27.89 -0.09 -0.29 16 10 C -0.51 -14.60 8.71 -34.44 -0.30 -14.90 16 11 H 0.08 2.33 7.47 -52.49 -0.39 1.93 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 14 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 18 C 0.08 1.59 4.25 -6.74 -0.03 1.56 16 19 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 20 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.04 0.54 6.66 -51.93 -0.35 0.19 16 23 H 0.06 0.78 7.62 -51.93 -0.40 0.39 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.23 7.26 -51.93 -0.38 0.86 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.79 6.58 -51.93 -0.34 0.44 16 29 H 0.06 0.96 7.61 -51.93 -0.40 0.57 16 30 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 31 H 0.01 0.30 7.40 -51.93 -0.38 -0.08 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.09 2.03 6.44 -51.93 -0.33 1.69 16 34 H 0.00 0.09 7.55 -51.93 -0.39 -0.31 16 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -30.01 256.68 -7.43 -37.44 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.78 Total: -3.68 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -0.58 Total: -17.16 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.27 Total: -37.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.01 -7.43 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.026 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds