Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47629 * 111.00125 * 2 1 4 4 C 1.50814 * 108.04133 * 150.32558 * 3 2 1 5 5 C 1.53820 * 111.61943 * 95.06451 * 4 3 2 6 6 C 1.54166 * 111.96819 * 319.04163 * 5 4 3 7 7 C 1.50749 * 112.61823 * 318.48865 * 6 5 4 8 8 H 1.09002 * 109.54226 * 333.14024 * 7 6 5 9 9 C 1.52999 * 109.54599 * 212.87960 * 7 6 5 10 10 C 1.50696 * 109.47212 * 175.44362 * 9 7 6 11 11 H 1.08000 * 120.00363 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00190 * 179.97438 * 10 9 7 13 13 N 1.31518 * 120.00392 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99905 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47371 * 89.99583 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99802 * 14 12 10 17 17 H 1.48503 * 109.46912 * 329.99625 * 14 12 10 18 18 C 1.39785 * 110.99635 * 231.10252 * 2 1 3 19 19 H 1.08997 * 109.47429 * 188.89763 * 1 2 3 20 20 H 1.08997 * 109.47027 * 308.90115 * 1 2 3 21 21 H 1.09001 * 109.47474 * 68.89724 * 1 2 3 22 22 H 1.08995 * 109.75116 * 269.96131 * 3 2 1 23 23 H 1.09000 * 109.74730 * 30.69218 * 3 2 1 24 24 H 1.09003 * 109.05321 * 215.61495 * 4 3 2 25 25 H 1.08999 * 109.05498 * 334.58391 * 4 3 2 26 26 H 1.09000 * 108.98228 * 79.69013 * 5 4 3 27 27 H 1.09006 * 108.98028 * 198.40369 * 5 4 3 28 28 H 1.09006 * 108.85426 * 79.29953 * 6 5 4 29 29 H 1.09005 * 108.85436 * 197.78109 * 6 5 4 30 30 H 1.09003 * 109.46949 * 295.44262 * 9 7 6 31 31 H 1.08997 * 109.47571 * 55.44392 * 9 7 6 32 32 H 0.96999 * 119.99899 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.01992 * 309.72373 * 18 2 1 34 34 H 1.09001 * 109.02181 * 68.55125 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3286 1.3678 0.7099 5 6 4.4983 1.2353 -0.2803 6 6 4.1922 0.2235 -1.4024 7 6 3.4971 -1.0137 -0.8938 8 1 3.7617 -1.1771 0.1509 9 6 3.9275 -2.2221 -1.7277 10 6 3.3199 -3.4738 -1.1490 11 1 2.6900 -3.4137 -0.2738 12 6 3.5680 -4.6961 -1.7370 13 7 3.0381 -5.7886 -1.2318 14 14 4.6580 -4.8004 -3.2504 15 1 6.0694 -4.9945 -2.8315 16 1 4.2291 -5.9467 -4.0913 17 1 4.5420 -3.5427 -4.0316 18 6 1.9699 -0.8195 -1.0157 19 1 -0.3634 -1.0152 0.1589 20 1 -0.3633 0.6453 0.7997 21 1 -0.3634 0.3700 -0.9587 22 1 2.1307 1.7218 -1.0258 23 1 1.3065 2.0382 0.5236 24 1 3.4403 2.2960 1.2703 25 1 3.3549 0.5280 1.4043 26 1 4.6975 2.2098 -0.7261 27 1 5.3856 0.9067 0.2610 28 1 3.5566 0.7040 -2.1463 29 1 5.1285 -0.0703 -1.8769 30 1 3.5869 -2.0943 -2.7552 31 1 5.0142 -2.3054 -1.7128 32 1 3.2130 -6.6484 -1.6452 33 1 1.4823 -1.7927 -0.9597 34 1 1.7454 -0.3661 -1.9811 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107403087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = -31.816676 kcal Electronic energy + Delta-G solvation = -13214.838669 eV Core-core repulsion = 11146.109599 eV Total energy + Delta-G solvation = -2068.729070 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43676 -36.14272 -35.03114 -33.69318 -29.95426 -28.45269 -26.31609 -25.14543 -22.99437 -21.30674 -20.15677 -18.78752 -16.83733 -16.51171 -16.28169 -15.66262 -15.60217 -14.78128 -14.51186 -14.12322 -13.75458 -13.50526 -13.18458 -12.93255 -12.76227 -12.61933 -12.26558 -11.83433 -11.71128 -11.65340 -11.35501 -11.12010 -11.04791 -10.85532 -10.71697 -9.04417 -8.25399 -6.27513 1.35174 1.36757 1.48745 2.37653 3.07093 3.15703 3.92418 3.98771 4.13833 4.26190 4.33177 4.45725 4.54108 4.61631 4.72579 4.82239 4.84484 4.96870 5.00524 5.01735 5.08654 5.19474 5.28056 5.36447 5.38355 5.50778 5.57555 5.74066 5.76496 6.34670 6.36287 6.57240 6.79753 7.35669 8.91395 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042355 B = 0.010517 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.913804 B = 2661.725711 C = 3079.996291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.575 5.575 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.063 4.063 8 H 0.054 0.946 9 C -0.005 4.005 10 C -0.517 4.517 11 H 0.033 0.967 12 C 0.001 3.999 13 N -0.953 5.953 14 Si 0.948 3.052 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.248 1.248 18 C 0.096 3.904 19 H 0.051 0.949 20 H 0.087 0.913 21 H 0.026 0.974 22 H 0.040 0.960 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 16.297 -0.106 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.299 5.299 3 C -0.060 4.060 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.082 4.082 8 H 0.072 0.928 9 C -0.043 4.043 10 C -0.555 4.555 11 H 0.051 0.949 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.771 3.229 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.172 1.172 18 C -0.033 4.033 19 H 0.069 0.931 20 H 0.106 0.894 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 0.108 15.935 0.262 15.937 hybrid contribution -0.037 -0.690 -1.215 1.398 sum 0.070 15.245 -0.953 15.275 Atomic orbital electron populations 1.22349 0.86290 1.02053 1.00749 1.58813 1.08144 1.13118 1.49841 1.21898 0.96935 0.87445 0.99754 1.21405 0.93570 1.02211 0.98236 1.21888 0.98153 0.98677 0.96183 1.21524 1.00068 0.95165 0.98544 1.20766 0.93873 0.94265 0.99326 0.92794 1.19609 0.95712 0.93300 0.95660 1.21440 1.29478 0.91873 1.12667 0.94887 1.26003 0.97447 0.95306 1.00722 1.70081 1.47163 0.99080 1.43119 0.85697 0.79192 0.78430 0.79546 1.19252 1.21095 1.17210 1.20745 0.95961 0.95891 0.90745 0.93053 0.89428 0.95512 0.94147 0.89210 0.89700 0.92878 0.90513 0.92356 0.92669 0.92440 0.96707 0.96415 0.92709 0.93442 0.97473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.46 127.69 1.21 2.13 16 2 N -0.57 -19.08 4.19 -939.58 -3.94 -23.02 16 3 C 0.07 1.69 5.37 85.45 0.46 2.15 16 4 C -0.12 -2.91 5.41 30.16 0.16 -2.75 16 5 C -0.11 -2.84 5.91 31.27 0.18 -2.65 16 6 C -0.12 -3.69 4.88 30.26 0.15 -3.54 16 7 C -0.06 -2.58 1.86 -11.04 -0.02 -2.60 16 8 H 0.05 2.40 7.11 -2.39 -0.02 2.38 16 9 C -0.01 -0.25 3.35 29.85 0.10 -0.15 16 10 C -0.52 -30.50 8.71 25.60 0.22 -30.28 16 11 H 0.03 2.17 7.47 -2.91 -0.02 2.14 16 12 C 0.00 0.08 5.47 84.65 0.46 0.54 16 13 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 14 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 18 C 0.10 3.82 4.25 88.07 0.37 4.19 16 19 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 20 H 0.09 1.96 7.83 -2.39 -0.02 1.94 16 21 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.04 1.03 6.66 -2.39 -0.02 1.02 16 23 H 0.09 1.85 7.62 -2.39 -0.02 1.83 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.61 7.26 -2.39 -0.02 1.59 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.68 6.58 -2.38 -0.02 1.66 16 29 H 0.06 1.82 7.61 -2.38 -0.02 1.80 16 30 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 31 H 0.02 0.83 7.40 -2.39 -0.02 0.82 16 32 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 33 H 0.05 2.25 6.44 -2.39 -0.02 2.24 16 34 H 0.01 0.28 7.55 -2.39 -0.02 0.26 16 Total: -1.00 -66.54 256.68 2.54 -64.00 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.99 Total: 5.55 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 3.30 Total: -32.96 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -3.64 Total: -83.91 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -66.54 2.54 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107403087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.185 kcal (2) G-P(sol) polarization free energy of solvation -66.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds