Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46894 * 109.47466 * 2 1 4 4 C 1.47636 * 110.99781 * 293.95182 * 3 2 1 5 5 C 1.50816 * 108.03769 * 150.32598 * 4 3 2 6 6 C 1.53822 * 111.61982 * 95.06165 * 5 4 3 7 7 C 1.54164 * 111.97247 * 319.04260 * 6 5 4 8 8 H 1.09007 * 108.85825 * 79.28704 * 7 6 5 9 9 C 1.50698 * 108.77446 * 197.72917 * 7 6 5 10 10 H 1.08011 * 120.00163 * 123.03054 * 9 7 6 11 11 C 1.37877 * 120.00119 * 303.03686 * 9 7 6 12 12 N 1.31513 * 119.99818 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99879 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47418 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47073 * 120.00121 * 13 11 9 16 16 H 1.48507 * 109.46965 * 239.99611 * 13 11 9 17 17 C 1.50754 * 112.61093 * 318.48311 * 7 6 5 18 18 C 1.39783 * 111.00296 * 165.05095 * 3 2 1 19 19 H 1.09001 * 109.47354 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47396 * 300.00075 * 1 2 3 21 21 H 1.08997 * 109.47370 * 60.00185 * 1 2 3 22 22 H 1.09005 * 109.47330 * 239.99506 * 2 1 3 23 23 H 1.09006 * 109.47357 * 119.99626 * 2 1 3 24 24 H 1.09001 * 109.74381 * 30.69638 * 4 3 2 25 25 H 1.09000 * 109.79284 * 269.98398 * 4 3 2 26 26 H 1.08999 * 109.05276 * 215.61170 * 5 4 3 27 27 H 1.08999 * 109.05478 * 334.51075 * 5 4 3 28 28 H 1.09000 * 108.97703 * 79.67929 * 6 5 4 29 29 H 1.09001 * 108.98127 * 198.39728 * 6 5 4 30 30 H 0.96999 * 119.99657 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.54589 * 333.14426 * 17 7 6 32 32 H 1.09006 * 109.61833 * 212.92476 * 17 7 6 33 33 H 1.08994 * 109.02247 * 309.72545 * 18 3 2 34 34 H 1.08997 * 109.01776 * 68.62542 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6685 2.0702 -1.2596 5 6 1.5044 3.5395 -0.9618 6 6 2.7982 4.3227 -1.2427 7 6 4.0503 3.5553 -0.7737 8 1 4.2954 2.7943 -1.5147 9 6 5.2015 4.5223 -0.6707 10 1 5.7292 4.6362 0.2649 11 6 5.5812 5.2619 -1.7707 12 7 4.9390 5.1230 -2.9099 13 14 7.0077 6.4611 -1.6427 14 1 7.5575 6.4311 -0.2637 15 1 8.0681 6.0736 -2.6074 16 1 6.5312 7.8324 -1.9555 17 6 3.8538 2.8876 0.5636 18 6 3.3754 1.4369 0.3366 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 0.7341 1.6670 -1.6501 25 1 2.4645 1.9293 -1.9908 26 1 0.7036 3.9412 -1.5827 27 1 1.2351 3.6621 0.0872 28 1 2.8758 4.5064 -2.3143 29 1 2.7534 5.2797 -0.7228 30 1 5.2058 5.6436 -3.6836 31 1 3.1044 3.4332 1.1370 32 1 4.7966 2.8793 1.1106 33 1 3.5372 0.8626 1.2488 34 1 3.9589 0.9937 -0.4702 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107456992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = -9.183458 kcal Electronic energy + Delta-G solvation = -13304.095109 eV Core-core repulsion = 11236.347489 eV Total energy + Delta-G solvation = -2067.747620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77767 -34.79073 -32.06918 -31.42391 -29.74824 -25.79813 -24.98978 -22.72592 -21.63397 -19.91375 -18.18654 -16.40654 -15.42812 -15.03212 -14.53293 -13.95231 -13.66942 -13.09289 -12.86955 -12.18972 -11.96293 -11.63381 -11.43097 -11.22552 -10.98281 -10.87316 -10.59667 -10.35744 -10.18015 -9.92927 -9.61499 -9.24610 -8.95675 -8.53538 -8.22492 -7.62140 -5.91999 -3.96601 3.32427 3.40470 3.44622 4.45676 4.48961 5.23690 5.37059 5.47677 5.54449 5.70737 5.87961 5.98368 6.02181 6.09456 6.21859 6.30937 6.35897 6.36479 6.55631 6.73096 6.81925 6.94470 7.03478 7.30580 7.35357 7.56826 7.75958 7.86951 8.02119 8.14954 8.25029 8.54819 9.07994 9.67132 11.13978 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.070020 B = 0.009166 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.788005 B = 3054.052504 C = 3253.959859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.552 5.552 4 C 0.068 3.932 5 C -0.119 4.119 6 C -0.099 4.099 7 C 0.044 3.956 8 H 0.017 0.983 9 C -0.513 4.513 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.102 4.102 18 C 0.075 3.925 19 H 0.051 0.949 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.257 0.743 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -7.108 3.714 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.277 5.277 4 C -0.058 4.058 5 C -0.157 4.157 6 C -0.138 4.138 7 C 0.026 3.974 8 H 0.036 0.964 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.716 3.284 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.140 4.140 18 C -0.055 4.055 19 H 0.070 0.930 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.797 -6.793 3.871 10.360 hybrid contribution 1.255 0.315 -0.680 1.461 sum -5.542 -6.478 3.191 9.103 Atomic orbital electron populations 1.21825 0.95525 1.00650 1.02461 1.22001 0.95652 0.89727 0.99997 1.58970 1.18912 1.14634 1.35196 1.21827 0.99367 0.95263 0.89342 1.21530 0.99354 0.94090 1.00731 1.21937 0.91730 0.97023 1.03067 1.18523 0.93195 0.94569 0.91106 0.96447 1.21449 1.14733 1.22458 0.96455 0.92774 1.24994 0.96559 0.97045 0.95533 1.69941 1.40570 1.41404 1.01057 0.86611 0.82683 0.81164 0.77986 1.19865 1.21187 1.21130 1.21592 0.99158 0.92871 1.00346 1.21034 0.87065 0.99155 0.98218 0.93029 0.92106 0.92601 0.95543 0.91579 0.92217 0.93605 0.94041 0.92311 0.90469 0.94430 0.93310 0.92688 0.92665 0.92930 0.96788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.90 37.15 0.37 -1.42 16 2 C 0.05 0.77 5.65 -3.83 -0.02 0.75 16 3 N -0.55 -9.68 3.93 -240.00 -0.94 -10.63 16 4 C 0.07 1.26 5.16 -4.51 -0.02 1.24 16 5 C -0.12 -2.36 5.41 -27.40 -0.15 -2.51 16 6 C -0.10 -2.41 4.64 -25.70 -0.12 -2.52 16 7 C 0.04 1.12 1.65 -92.29 -0.15 0.97 16 8 H 0.02 0.48 6.58 -51.92 -0.34 0.14 16 9 C -0.51 -14.35 8.33 -34.44 -0.29 -14.64 16 10 H 0.05 1.50 7.44 -52.48 -0.39 1.11 16 11 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 12 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C -0.10 -2.21 5.14 -27.11 -0.14 -2.34 16 18 C 0.07 1.41 4.93 -6.74 -0.03 1.37 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.69 6.26 -51.93 -0.32 0.37 16 22 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 23 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 24 H 0.06 0.96 5.85 -51.93 -0.30 0.66 16 25 H 0.05 0.95 6.67 -51.93 -0.35 0.61 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.16 7.26 -51.93 -0.38 0.78 16 28 H 0.08 2.06 6.50 -51.93 -0.34 1.72 16 29 H 0.04 0.95 7.97 -51.93 -0.41 0.53 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.05 1.19 7.11 -51.93 -0.37 0.82 16 32 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.05 0.89 7.74 -51.93 -0.40 0.48 16 34 H 0.01 0.28 7.54 -51.93 -0.39 -0.11 16 LS Contribution 255.22 15.07 3.85 3.85 Total: -1.00 -28.48 255.22 -7.76 -36.24 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.61 Total: -3.34 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.65 Total: -17.53 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.32 Total: -35.84 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.48 -7.76 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107456992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.053 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds