Wall clock time and date at job start Mon Mar 30 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 5 5 N 1.46901 * 109.46916 * 294.99594 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47224 * 325.00460 * 6 5 4 8 8 C 1.53002 * 109.47102 * 85.00132 * 6 5 4 9 9 C 1.50702 * 109.47206 * 205.00135 * 6 5 4 10 10 H 1.08003 * 119.99769 * 0.02562 * 9 6 5 11 11 C 1.37868 * 119.99983 * 180.02562 * 9 6 5 12 12 N 1.31519 * 120.00448 * 359.97438 * 11 9 6 13 13 Si 1.86807 * 120.00188 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.46437 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47263 * 119.99625 * 13 11 9 16 16 H 1.48498 * 109.47269 * 240.00311 * 13 11 9 17 17 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 18 18 C 1.53006 * 117.49663 * 128.62434 * 17 2 1 19 19 C 1.53000 * 59.99927 * 252.50879 * 18 17 2 20 20 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 21 21 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 22 22 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46889 * 174.99975 * 4 2 1 24 24 H 1.08995 * 109.47384 * 54.99615 * 4 2 1 25 25 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 26 26 H 1.09003 * 109.46813 * 60.00077 * 8 6 5 27 27 H 1.08999 * 109.47105 * 180.02562 * 8 6 5 28 28 H 1.08996 * 109.46950 * 299.99914 * 8 6 5 29 29 H 0.96997 * 120.00331 * 179.97438 * 12 11 9 30 30 H 1.08998 * 115.55471 * 274.33258 * 17 2 1 31 31 H 1.08995 * 117.49942 * 0.02562 * 18 17 2 32 32 H 1.09000 * 117.49879 * 145.02365 * 18 17 2 33 33 H 1.08994 * 117.50324 * 252.50401 * 19 18 17 34 34 H 1.09005 * 117.51261 * 107.47963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6265 3.6672 7 1 2.0823 -1.7074 3.5335 8 6 3.5692 -0.2049 3.9491 9 6 1.2504 -0.2283 4.8276 10 1 0.4241 0.4498 4.6730 11 6 1.5045 -0.7297 6.0865 12 7 2.5104 -1.5558 6.2748 13 14 0.4191 -0.2368 7.5248 14 1 -0.6364 0.6946 7.0518 15 1 -0.2141 -1.4481 8.1051 16 1 1.2446 0.4347 8.5606 17 6 2.0399 -0.7214 -1.2492 18 6 3.0741 0.0050 -2.1116 19 6 1.6357 -0.1497 -2.6096 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1262 -0.7995 1.2056 24 1 1.6052 -1.7198 1.2953 25 1 1.9882 0.9873 2.3966 26 1 3.6125 0.8760 4.0828 27 1 3.9213 -0.6979 4.8552 28 1 4.2022 -0.4929 3.1098 29 1 2.6893 -1.9083 7.1605 30 1 2.1266 -1.8046 -1.1641 31 1 3.3914 0.9965 -1.7889 32 1 3.8415 -0.6003 -2.5941 33 1 1.4568 -0.8567 -3.4196 34 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123062559.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:43 Heat of formation + Delta-G solvation = 5.790965 kcal Electronic energy + Delta-G solvation = -12617.550744 eV Core-core repulsion = 10550.452464 eV Total energy + Delta-G solvation = -2067.098281 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.16591 -35.80996 -33.06715 -31.21401 -27.92385 -25.29848 -24.87817 -22.20712 -21.98296 -20.17959 -19.43934 -16.33294 -15.41234 -14.87379 -14.50283 -14.30603 -13.56386 -13.10469 -12.46151 -12.40687 -11.84258 -11.57406 -11.46615 -11.26100 -10.96901 -10.80217 -10.62730 -10.45752 -10.35800 -10.12489 -10.09084 -9.76573 -9.61727 -8.91880 -8.32508 -7.13100 -5.94319 -3.97334 3.34168 3.41678 3.47258 3.89997 4.47143 4.72721 5.02597 5.03191 5.32535 5.37175 5.54988 5.64682 5.68574 5.82721 5.88160 5.98425 6.15384 6.24477 6.32360 6.38756 6.49453 6.72685 6.75836 6.81729 6.89975 7.16155 7.44207 7.78654 7.94086 8.33656 8.61407 8.69103 9.10587 9.68054 11.12831 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066826 B = 0.007028 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.900318 B = 3983.113202 C = 4250.818712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 H 0.063 0.937 4 C 0.068 3.932 5 N -0.683 5.683 6 C 0.210 3.790 7 H 0.032 0.968 8 C -0.168 4.168 9 C -0.492 4.492 10 H 0.063 0.937 11 C 0.053 3.947 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.141 4.141 18 C -0.184 4.184 19 C -0.181 4.181 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.323 0.677 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.004 0.996 29 H 0.258 0.742 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 2.379 -12.812 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.077 4.077 3 H 0.081 0.919 4 C -0.062 4.062 5 N -0.312 5.312 6 C 0.102 3.898 7 H 0.050 0.950 8 C -0.228 4.228 9 C -0.531 4.531 10 H 0.081 0.919 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.160 4.160 18 C -0.221 4.221 19 C -0.218 4.218 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.791 1.984 -12.623 12.802 hybrid contribution 0.601 0.321 0.771 1.029 sum -0.189 2.305 -11.852 12.075 Atomic orbital electron populations 1.21659 0.94466 1.01612 1.01212 1.20743 0.96437 0.98306 0.92206 0.91886 1.21891 0.96544 0.97748 0.90033 1.60800 1.63944 1.04670 1.01759 1.19171 0.90302 0.94243 0.86063 0.94999 1.22424 0.99695 0.99403 1.01256 1.21219 1.12957 1.27154 0.91742 0.91925 1.24963 0.95525 0.95346 0.98842 1.69900 1.29168 1.32507 1.22329 0.86462 0.80511 0.78246 0.82297 1.19750 1.21183 1.21251 1.22378 1.02732 0.99254 0.91603 1.22990 0.92366 1.02077 1.04703 1.22893 0.97988 1.03304 0.97661 0.91069 0.94170 0.93220 0.96525 0.91908 0.86138 0.95417 0.89352 0.97667 0.93195 0.88059 0.89023 0.89302 0.89304 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.92 37.15 0.33 -1.61 16 2 C -0.06 -0.86 2.68 -90.62 -0.24 -1.11 16 3 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 4 C 0.07 1.24 4.85 -3.82 -0.02 1.23 16 5 N -0.68 -14.67 5.69 -107.94 -0.61 -15.29 16 6 C 0.21 5.39 2.57 -68.86 -0.18 5.21 16 7 H 0.03 0.90 7.80 -51.93 -0.41 0.50 16 8 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 9 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 10 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 11 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 12 N -0.90 -26.15 11.32 55.43 0.63 -25.52 16 13 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C -0.14 -1.82 5.15 -90.62 -0.47 -2.29 16 18 C -0.18 -2.11 10.18 -26.73 -0.27 -2.38 16 19 C -0.18 -1.99 9.73 -26.73 -0.26 -2.25 16 20 H 0.07 1.17 7.75 -51.92 -0.40 0.77 16 21 H 0.04 0.51 7.29 -51.93 -0.38 0.13 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 24 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 25 H 0.32 6.62 8.47 -39.29 -0.33 6.29 16 26 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.99 7.61 -51.93 -0.39 0.59 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -28.37 275.70 -7.93 -36.30 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.90 Total: 3.37 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.17 Total: -19.75 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.01 Total: -40.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.37 -7.93 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123062559.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.090 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds