Wall clock time and date at job start Mon Mar 30 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 5 5 N 1.46901 * 109.46916 * 294.99594 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47224 * 325.00460 * 6 5 4 8 8 C 1.53002 * 109.47102 * 85.00132 * 6 5 4 9 9 C 1.50702 * 109.47206 * 205.00135 * 6 5 4 10 10 H 1.08003 * 119.99769 * 0.02562 * 9 6 5 11 11 C 1.37868 * 119.99983 * 180.02562 * 9 6 5 12 12 N 1.31519 * 120.00448 * 359.97438 * 11 9 6 13 13 Si 1.86807 * 120.00188 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.46437 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47263 * 119.99625 * 13 11 9 16 16 H 1.48498 * 109.47269 * 240.00311 * 13 11 9 17 17 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 18 18 C 1.53006 * 117.49663 * 128.62434 * 17 2 1 19 19 C 1.53000 * 59.99927 * 252.50879 * 18 17 2 20 20 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 21 21 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 22 22 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46889 * 174.99975 * 4 2 1 24 24 H 1.08995 * 109.47384 * 54.99615 * 4 2 1 25 25 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 26 26 H 1.09003 * 109.46813 * 60.00077 * 8 6 5 27 27 H 1.08999 * 109.47105 * 180.02562 * 8 6 5 28 28 H 1.08996 * 109.46950 * 299.99914 * 8 6 5 29 29 H 0.96997 * 120.00331 * 179.97438 * 12 11 9 30 30 H 1.08998 * 115.55471 * 274.33258 * 17 2 1 31 31 H 1.08995 * 117.49942 * 0.02562 * 18 17 2 32 32 H 1.09000 * 117.49879 * 145.02365 * 18 17 2 33 33 H 1.08994 * 117.50324 * 252.50401 * 19 18 17 34 34 H 1.09005 * 117.51261 * 107.47963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6265 3.6672 7 1 2.0823 -1.7074 3.5335 8 6 3.5692 -0.2049 3.9491 9 6 1.2504 -0.2283 4.8276 10 1 0.4241 0.4498 4.6730 11 6 1.5045 -0.7297 6.0865 12 7 2.5104 -1.5558 6.2748 13 14 0.4191 -0.2368 7.5248 14 1 -0.6364 0.6946 7.0518 15 1 -0.2141 -1.4481 8.1051 16 1 1.2446 0.4347 8.5606 17 6 2.0399 -0.7214 -1.2492 18 6 3.0741 0.0050 -2.1116 19 6 1.6357 -0.1497 -2.6096 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1262 -0.7995 1.2056 24 1 1.6052 -1.7198 1.2953 25 1 1.9882 0.9873 2.3966 26 1 3.6125 0.8760 4.0828 27 1 3.9213 -0.6979 4.8552 28 1 4.2022 -0.4929 3.1098 29 1 2.6893 -1.9083 7.1605 30 1 2.1266 -1.8046 -1.1641 31 1 3.3914 0.9965 -1.7889 32 1 3.8415 -0.6003 -2.5941 33 1 1.4568 -0.8567 -3.4196 34 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123062559.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:43 Heat of formation + Delta-G solvation = -10.769689 kcal Electronic energy + Delta-G solvation = -12618.268868 eV Core-core repulsion = 10550.452464 eV Total energy + Delta-G solvation = -2067.816404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33004 -37.48564 -34.84061 -32.88755 -29.68327 -27.27843 -26.44176 -23.34559 -23.07257 -22.08698 -20.64519 -18.36601 -16.85591 -16.40852 -16.09060 -15.75951 -15.07838 -14.71724 -14.21796 -13.68439 -13.55205 -13.13324 -12.95401 -12.88249 -12.61184 -12.34449 -12.21968 -12.08179 -12.03496 -11.72955 -11.54701 -11.15084 -10.87865 -10.70342 -10.48919 -8.91765 -8.09159 -6.20574 1.42573 1.43996 1.56794 2.44776 2.97135 3.19010 3.53955 3.93147 4.03766 4.14924 4.27383 4.46302 4.55294 4.70888 4.73472 4.82895 4.85579 4.91750 5.00620 5.07527 5.10415 5.16731 5.30382 5.32812 5.42345 5.49997 5.60537 5.69712 5.82656 6.28086 6.66529 6.85608 6.96269 7.49784 8.96782 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066826 B = 0.007028 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.900318 B = 3983.113202 C = 4250.818712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 H 0.067 0.933 4 C 0.071 3.929 5 N -0.683 5.683 6 C 0.214 3.786 7 H -0.002 1.002 8 C -0.155 4.155 9 C -0.513 4.513 10 H 0.055 0.945 11 C 0.006 3.994 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.161 4.161 18 C -0.181 4.181 19 C -0.166 4.166 20 H 0.049 0.951 21 H 0.063 0.937 22 H 0.043 0.957 23 H 0.013 0.987 24 H 0.048 0.952 25 H 0.330 0.670 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 3.221 -13.852 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.066 4.066 3 H 0.085 0.915 4 C -0.058 4.058 5 N -0.312 5.312 6 C 0.105 3.895 7 H 0.016 0.984 8 C -0.215 4.215 9 C -0.551 4.551 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.566 5.566 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.179 4.179 18 C -0.218 4.218 19 C -0.203 4.203 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.147 0.853 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.158 2.833 -13.682 14.021 hybrid contribution 0.732 0.036 1.047 1.278 sum -0.426 2.869 -12.635 12.964 Atomic orbital electron populations 1.21611 0.94304 1.01284 1.01325 1.20611 0.96475 0.98190 0.91374 0.91456 1.21914 0.96324 0.97218 0.90369 1.60669 1.63996 1.05062 1.01507 1.18946 0.90730 0.92483 0.87334 0.98407 1.22232 0.99294 0.99346 1.00625 1.21495 1.13300 1.27336 0.93004 0.92653 1.25757 0.96772 0.95221 1.01434 1.70025 1.30376 1.33159 1.23009 0.85433 0.78812 0.77977 0.78931 1.19241 1.20788 1.20528 1.22251 1.05003 0.98998 0.91672 1.23079 0.92911 1.01980 1.03842 1.22981 0.97583 1.03390 0.96313 0.93185 0.91758 0.93772 0.96838 0.93379 0.85327 0.94809 0.92024 0.95854 0.93030 0.88459 0.88906 0.88193 0.87778 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.92 71.98 0.64 -2.96 16 2 C -0.05 -1.36 2.68 -10.80 -0.03 -1.39 16 3 H 0.07 1.87 7.90 -2.39 -0.02 1.86 16 4 C 0.07 2.62 4.85 86.30 0.42 3.03 16 5 N -0.68 -29.47 5.69 -495.42 -2.82 -32.28 16 6 C 0.21 11.15 2.57 44.17 0.11 11.27 16 7 H 0.00 -0.12 7.80 -2.39 -0.02 -0.14 16 8 C -0.16 -7.70 8.94 71.98 0.64 -7.06 16 9 C -0.51 -29.12 8.84 25.60 0.23 -28.90 16 10 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 11 C 0.01 0.33 5.30 84.65 0.45 0.78 16 12 N -0.93 -54.40 11.32 21.44 0.24 -54.16 16 13 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 C -0.16 -3.84 5.15 -10.79 -0.06 -3.90 16 18 C -0.18 -3.67 10.18 30.60 0.31 -3.36 16 19 C -0.17 -3.14 9.73 30.59 0.30 -2.84 16 20 H 0.05 1.61 7.75 -2.38 -0.02 1.59 16 21 H 0.06 1.49 7.29 -2.39 -0.02 1.47 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.01 0.50 7.44 -2.39 -0.02 0.48 16 24 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 25 H 0.33 13.39 8.47 -89.69 -0.76 12.63 16 26 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 28 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.10 2.41 8.11 -2.39 -0.02 2.39 16 31 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.77 7.61 -2.38 -0.02 1.75 16 Total: -1.00 -60.05 275.70 2.76 -57.29 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.29 Total: 17.82 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.02 Total: -35.32 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.57 Total: -86.44 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.05 2.76 -57.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123062559.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.523 kcal (2) G-P(sol) polarization free energy of solvation -60.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds