Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 C 1.50706 * 109.47441 * 120.00196 * 2 1 3 5 5 H 1.07995 * 119.99844 * 119.99515 * 4 2 1 6 6 C 1.37873 * 119.99599 * 300.00497 * 4 2 1 7 7 N 1.31510 * 120.00334 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99776 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47055 * 119.99352 * 8 6 4 11 11 H 1.48500 * 109.47184 * 239.99654 * 8 6 4 12 12 N 1.46907 * 109.47191 * 240.00238 * 2 1 3 13 13 C 1.46901 * 110.99853 * 84.99891 * 12 2 1 14 14 H 1.09001 * 109.47329 * 324.99994 * 13 12 2 15 15 C 1.52999 * 109.47145 * 84.99937 * 13 12 2 16 16 C 1.53001 * 109.47034 * 204.99937 * 13 12 2 17 17 C 1.53778 * 113.61433 * 161.60666 * 16 13 12 18 18 C 1.53776 * 87.08217 * 220.02099 * 17 16 13 19 19 C 1.53777 * 113.61013 * 64.11213 * 16 13 12 20 20 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47030 * 299.99783 * 1 2 3 22 22 H 1.09003 * 109.47295 * 59.99775 * 1 2 3 23 23 H 0.96999 * 120.00378 * 180.02562 * 7 6 4 24 24 H 1.00901 * 111.00037 * 208.95205 * 12 2 1 25 25 H 1.08995 * 109.47036 * 176.06944 * 15 13 12 26 26 H 1.08993 * 109.47583 * 296.07399 * 15 13 12 27 27 H 1.09007 * 109.46906 * 56.07057 * 15 13 12 28 28 H 1.08994 * 112.84962 * 292.92022 * 16 13 12 29 29 H 1.09002 * 113.61398 * 334.57471 * 17 16 13 30 30 H 1.08998 * 113.61197 * 105.46942 * 17 16 13 31 31 H 1.09000 * 113.61658 * 270.88708 * 18 17 16 32 32 H 1.09003 * 113.69082 * 139.99275 * 18 17 16 33 33 H 1.09005 * 113.61699 * 254.52471 * 19 16 13 34 34 H 1.09001 * 113.62106 * 25.43399 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2575 0.9330 -2.2907 15 6 3.4110 0.9810 -2.3224 16 6 1.9770 -0.5795 -3.6455 17 6 1.5852 0.2712 -4.8651 18 6 0.6934 -0.9037 -5.2996 19 6 0.6302 -1.3019 -3.8155 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7094 1.1616 3.4844 24 1 2.9173 -1.1205 -1.0288 25 1 3.4879 1.6081 -3.2105 26 1 3.4560 1.6065 -1.4309 27 1 4.2358 0.2685 -2.3082 28 1 2.8412 -1.2208 -3.8181 29 1 1.0270 1.1716 -4.6083 30 1 2.4138 0.4656 -5.5461 31 1 1.2068 -1.6333 -5.9259 32 1 -0.2681 -0.5953 -5.7102 33 1 0.6876 -2.3777 -3.6494 34 1 -0.1893 -0.8318 -3.2719 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124061224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = 2.435367 kcal Electronic energy + Delta-G solvation = -12984.311956 eV Core-core repulsion = 10917.068166 eV Total energy + Delta-G solvation = -2067.243790 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.80950 -35.70593 -32.84013 -30.20401 -26.90250 -25.48591 -24.95224 -24.91602 -20.91313 -19.47965 -19.05130 -16.46369 -15.21014 -14.90176 -14.49004 -13.88233 -13.58653 -12.68919 -12.45543 -12.18719 -12.05736 -11.77933 -11.43445 -11.35464 -10.93858 -10.65399 -10.54250 -10.38402 -10.17490 -10.08179 -9.97658 -9.75804 -9.47758 -8.76230 -8.44469 -7.12172 -5.99602 -4.05443 3.29982 3.37814 3.42163 4.42449 4.91098 4.99229 5.07964 5.24811 5.31972 5.63626 5.76554 5.78770 5.95813 6.01306 6.05870 6.09397 6.16001 6.37654 6.48306 6.54500 6.63785 6.70844 6.91301 7.00621 7.20863 7.30849 7.59322 7.82857 7.96410 8.32789 8.48692 8.76619 9.07441 9.60519 11.06778 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060446 B = 0.008212 C = 0.008009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.112590 B = 3408.641772 C = 3495.301058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.681 5.681 13 C 0.093 3.907 14 H 0.069 0.931 15 C -0.176 4.176 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.149 4.149 19 C -0.115 4.115 20 H 0.030 0.970 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.259 0.741 24 H 0.329 0.671 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 -0.998 -11.117 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.311 5.311 13 C -0.018 4.018 14 H 0.087 0.913 15 C -0.236 4.236 16 C -0.113 4.113 17 C -0.175 4.175 18 C -0.186 4.186 19 C -0.153 4.153 20 H 0.049 0.951 21 H 0.097 0.903 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.146 0.854 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.646 -1.135 -11.121 11.197 hybrid contribution 1.099 0.174 1.153 1.603 sum 1.746 -0.961 -9.968 10.165 Atomic orbital electron populations 1.21713 0.98084 0.99204 0.99132 1.19084 0.92401 0.92384 0.85736 0.98204 1.21330 1.31143 1.12371 0.90555 0.92269 1.24920 0.95123 0.95020 0.99017 1.69909 1.36860 1.22981 1.23241 0.86496 0.78599 0.79629 0.82998 1.19789 1.21155 1.21010 1.60756 1.31925 1.32645 1.05774 1.21505 0.95759 0.93190 0.91362 0.91315 1.22466 0.99052 1.00793 1.01242 1.22475 0.97751 0.97286 0.93782 1.22931 0.99244 0.97407 0.97921 1.22880 0.99566 0.98466 0.97707 1.22672 0.98079 1.00401 0.94138 0.95072 0.90291 0.97840 0.93064 0.85416 0.93410 0.92596 0.93178 0.90243 0.90472 0.92330 0.90922 0.92192 0.91965 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.17 37.15 0.34 -2.77 16 2 C 0.21 5.40 2.41 -68.86 -0.17 5.23 16 3 H 0.00 0.01 7.15 -51.93 -0.37 -0.36 16 4 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.68 -14.59 5.90 -100.95 -0.60 -15.18 16 13 C 0.09 1.68 2.11 -67.71 -0.14 1.54 16 14 H 0.07 1.35 7.00 -51.93 -0.36 0.99 16 15 C -0.18 -2.95 9.13 37.16 0.34 -2.61 16 16 C -0.09 -1.43 3.32 -89.81 -0.30 -1.73 16 17 C -0.14 -1.78 7.47 -25.92 -0.19 -1.98 16 18 C -0.15 -1.85 8.08 -25.92 -0.21 -2.06 16 19 C -0.12 -1.74 7.49 -25.92 -0.19 -1.94 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 22 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.33 6.99 7.92 -39.29 -0.31 6.68 16 25 H 0.05 0.69 8.01 -51.93 -0.42 0.28 16 26 H 0.05 1.04 7.48 -51.93 -0.39 0.65 16 27 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -27.99 271.17 -7.69 -35.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.88 Total: 3.36 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.91 Total: -19.30 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.03 Total: -40.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.99 -7.69 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124061224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.123 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds