Wall clock time and date at job start Mon Mar 30 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 C 1.50706 * 109.47441 * 120.00196 * 2 1 3 5 5 H 1.07995 * 119.99844 * 119.99515 * 4 2 1 6 6 C 1.37873 * 119.99599 * 300.00497 * 4 2 1 7 7 N 1.31510 * 120.00334 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99776 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47055 * 119.99352 * 8 6 4 11 11 H 1.48500 * 109.47184 * 239.99654 * 8 6 4 12 12 N 1.46907 * 109.47191 * 240.00238 * 2 1 3 13 13 C 1.46901 * 110.99853 * 84.99891 * 12 2 1 14 14 H 1.09001 * 109.47329 * 324.99994 * 13 12 2 15 15 C 1.52999 * 109.47145 * 84.99937 * 13 12 2 16 16 C 1.53001 * 109.47034 * 204.99937 * 13 12 2 17 17 C 1.53778 * 113.61433 * 161.60666 * 16 13 12 18 18 C 1.53776 * 87.08217 * 220.02099 * 17 16 13 19 19 C 1.53777 * 113.61013 * 64.11213 * 16 13 12 20 20 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47030 * 299.99783 * 1 2 3 22 22 H 1.09003 * 109.47295 * 59.99775 * 1 2 3 23 23 H 0.96999 * 120.00378 * 180.02562 * 7 6 4 24 24 H 1.00901 * 111.00037 * 208.95205 * 12 2 1 25 25 H 1.08995 * 109.47036 * 176.06944 * 15 13 12 26 26 H 1.08993 * 109.47583 * 296.07399 * 15 13 12 27 27 H 1.09007 * 109.46906 * 56.07057 * 15 13 12 28 28 H 1.08994 * 112.84962 * 292.92022 * 16 13 12 29 29 H 1.09002 * 113.61398 * 334.57471 * 17 16 13 30 30 H 1.08998 * 113.61197 * 105.46942 * 17 16 13 31 31 H 1.09000 * 113.61658 * 270.88708 * 18 17 16 32 32 H 1.09003 * 113.69082 * 139.99275 * 18 17 16 33 33 H 1.09005 * 113.61699 * 254.52471 * 19 16 13 34 34 H 1.09001 * 113.62106 * 25.43399 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2575 0.9330 -2.2907 15 6 3.4110 0.9810 -2.3224 16 6 1.9770 -0.5795 -3.6455 17 6 1.5852 0.2712 -4.8651 18 6 0.6934 -0.9037 -5.2996 19 6 0.6302 -1.3019 -3.8155 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7094 1.1616 3.4844 24 1 2.9173 -1.1205 -1.0288 25 1 3.4879 1.6081 -3.2105 26 1 3.4560 1.6065 -1.4309 27 1 4.2358 0.2685 -2.3082 28 1 2.8412 -1.2208 -3.8181 29 1 1.0270 1.1716 -4.6083 30 1 2.4138 0.4656 -5.5461 31 1 1.2068 -1.6333 -5.9259 32 1 -0.2681 -0.5953 -5.7102 33 1 0.6876 -2.3777 -3.6494 34 1 -0.1893 -0.8318 -3.2719 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124061224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:02 Heat of formation + Delta-G solvation = -14.167558 kcal Electronic energy + Delta-G solvation = -12985.031913 eV Core-core repulsion = 10917.068166 eV Total energy + Delta-G solvation = -2067.963747 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06906 -37.42083 -34.75690 -32.03865 -28.67000 -27.32872 -26.44044 -26.09762 -22.53437 -21.26904 -20.25041 -18.47737 -16.91408 -16.34423 -15.96161 -15.60523 -15.16435 -14.48670 -14.01154 -13.65212 -13.37345 -13.22819 -13.16074 -12.86156 -12.65556 -12.46601 -12.31875 -12.20634 -12.01208 -11.74614 -11.22639 -11.00628 -10.94418 -10.73608 -10.56438 -8.90224 -8.13047 -6.26890 1.40221 1.41988 1.53867 2.41286 3.15391 3.54434 3.85654 3.94990 4.07345 4.31084 4.37970 4.49031 4.58948 4.82442 4.86602 4.94223 5.00940 5.02472 5.06840 5.14210 5.16785 5.25198 5.29597 5.33287 5.52067 5.54360 5.71002 5.77726 5.89787 6.23901 6.54119 6.84671 7.06940 7.43881 8.92883 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060446 B = 0.008212 C = 0.008009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.112590 B = 3408.641772 C = 3495.301058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.218 3.782 3 H -0.032 1.032 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.679 5.679 13 C 0.091 3.909 14 H 0.049 0.951 15 C -0.169 4.169 16 C -0.094 4.094 17 C -0.129 4.129 18 C -0.133 4.133 19 C -0.125 4.125 20 H 0.025 0.975 21 H 0.054 0.946 22 H 0.017 0.983 23 H 0.262 0.738 24 H 0.329 0.671 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -1.720 -12.307 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 H -0.014 1.014 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.308 5.308 13 C -0.019 4.019 14 H 0.067 0.933 15 C -0.228 4.228 16 C -0.113 4.113 17 C -0.167 4.167 18 C -0.171 4.171 19 C -0.163 4.163 20 H 0.045 0.955 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.404 -1.859 -12.334 12.552 hybrid contribution 0.853 0.420 1.491 1.768 sum 2.257 -1.439 -10.843 11.169 Atomic orbital electron populations 1.21525 0.98113 0.98583 0.98632 1.18854 0.92333 0.90787 0.87079 1.01432 1.21651 1.31415 1.12551 0.91744 0.92369 1.25744 0.95230 0.95703 1.02078 1.70035 1.37671 1.24172 1.24027 0.85447 0.78110 0.78608 0.79085 1.19057 1.20618 1.20610 1.60698 1.31988 1.33045 1.05093 1.21589 0.95836 0.92969 0.91495 0.93317 1.22366 0.98448 1.00804 1.01151 1.22491 0.98182 0.97748 0.92916 1.22895 0.99912 0.97156 0.96769 1.22827 1.00228 0.98230 0.95795 1.22678 0.97298 0.99882 0.96452 0.95534 0.92698 0.96361 0.92909 0.85327 0.90754 0.95354 0.92140 0.89275 0.90889 0.90237 0.89103 0.91146 0.92418 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.70 9.17 71.98 0.66 -5.04 16 2 C 0.22 11.39 2.41 44.17 0.11 11.49 16 3 H -0.03 -1.84 7.15 -2.39 -0.02 -1.86 16 4 C -0.54 -30.01 8.59 25.60 0.22 -29.79 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.64 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.00 11.32 21.44 0.24 -53.76 16 8 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.68 -29.21 5.90 -473.29 -2.79 -32.00 16 13 C 0.09 3.27 2.11 44.92 0.09 3.36 16 14 H 0.05 1.93 7.00 -2.39 -0.02 1.91 16 15 C -0.17 -5.49 9.13 71.98 0.66 -4.84 16 16 C -0.09 -2.70 3.32 -10.27 -0.03 -2.73 16 17 C -0.13 -2.99 7.47 31.12 0.23 -2.76 16 18 C -0.13 -2.92 8.08 31.12 0.25 -2.67 16 19 C -0.13 -3.62 7.49 31.12 0.23 -3.39 16 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 3.10 6.07 -2.39 -0.01 3.08 16 22 H 0.02 0.84 7.43 -2.39 -0.02 0.82 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.33 13.98 7.92 -89.69 -0.71 13.27 16 25 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 26 H 0.03 1.05 7.48 -2.39 -0.02 1.03 16 27 H 0.06 1.83 8.06 -2.38 -0.02 1.81 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 1.76 8.02 -2.39 -0.02 1.74 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -59.84 271.17 2.69 -57.15 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.34 Total: 17.72 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 2.87 Total: -35.27 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.55 Total: -85.76 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.84 2.69 -57.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124061224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.978 kcal (2) G-P(sol) polarization free energy of solvation -59.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds