Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47043 * 2 1 4 4 N 1.46901 * 109.46865 * 119.99752 * 2 1 3 5 5 C 1.46903 * 111.00209 * 272.89538 * 4 2 1 6 6 H 1.09001 * 109.46584 * 344.01604 * 5 4 2 7 7 C 1.52993 * 109.47052 * 104.01427 * 5 4 2 8 8 C 1.50694 * 109.47306 * 224.01816 * 5 4 2 9 9 H 1.08005 * 120.00291 * 355.94736 * 8 5 4 10 10 C 1.37882 * 120.00066 * 175.94266 * 8 5 4 11 11 N 1.31516 * 119.99582 * 353.94988 * 10 8 5 12 12 Si 1.86794 * 120.00113 * 173.94744 * 10 8 5 13 13 H 1.48505 * 109.46946 * 270.00348 * 12 10 8 14 14 H 1.48504 * 109.47117 * 29.99994 * 12 10 8 15 15 H 1.48493 * 109.47394 * 150.00184 * 12 10 8 16 16 C 1.52999 * 109.47282 * 239.99428 * 2 1 3 17 17 C 1.53781 * 113.61353 * 159.13847 * 16 2 1 18 18 C 1.53964 * 87.01980 * 220.05075 * 17 16 2 19 19 C 1.53781 * 113.61118 * 61.53153 * 16 2 1 20 20 H 1.08991 * 109.47449 * 304.62610 * 1 2 3 21 21 H 1.09001 * 109.46997 * 64.62911 * 1 2 3 22 22 H 1.09005 * 109.47275 * 184.62331 * 1 2 3 23 23 H 1.00900 * 111.00050 * 148.94228 * 4 2 1 24 24 H 1.08998 * 109.47117 * 176.45090 * 7 5 4 25 25 H 1.09004 * 109.47418 * 296.45289 * 7 5 4 26 26 H 1.09005 * 109.47363 * 56.45129 * 7 5 4 27 27 H 0.96997 * 120.00060 * 354.35708 * 11 10 8 28 28 H 1.09001 * 112.85208 * 290.33774 * 16 2 1 29 29 H 1.08996 * 113.61608 * 334.56626 * 17 16 2 30 30 H 1.09003 * 113.61525 * 105.47624 * 17 16 2 31 31 H 1.09001 * 113.53202 * 270.80985 * 18 17 16 32 32 H 1.08991 * 113.74365 * 139.94318 * 18 17 16 33 33 H 1.08997 * 113.61453 * 254.52725 * 19 16 2 34 34 H 1.08997 * 113.61583 * 25.43612 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1297 0.2340 2.3342 6 1 2.0992 1.2607 1.9692 7 6 0.9648 0.0006 3.2981 8 6 3.4323 -0.0049 3.0532 9 1 4.0805 -0.8112 2.7429 10 6 3.7969 0.8060 4.1071 11 7 3.0688 1.8587 4.4092 12 14 5.3248 0.4093 5.1057 13 1 4.9590 -0.4782 6.2388 14 1 6.3176 -0.2768 4.2402 15 1 5.9127 1.6672 5.6321 16 6 2.0400 -0.7214 -1.2491 17 6 3.4867 -0.3578 -1.6229 18 6 3.0234 -0.3621 -3.0912 19 6 1.6121 -0.0511 -2.5654 20 1 -0.3634 0.5839 0.8456 21 1 -0.3633 0.4403 -0.9286 22 1 -0.3634 -1.0244 0.0828 23 1 2.9009 -1.1493 1.0189 24 1 1.0806 0.6437 4.1705 25 1 0.0257 0.2343 2.7965 26 1 0.9581 -1.0426 3.6141 27 1 2.3234 2.1117 3.8425 28 1 1.8520 -1.7947 -1.2245 29 1 3.7963 0.6244 -1.2657 30 1 4.2080 -1.1409 -1.3894 31 1 3.1056 -1.3376 -3.5706 32 1 3.4533 0.4411 -3.6894 33 1 0.8222 -0.5870 -3.0916 34 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124061628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -0.380290 kcal Electronic energy + Delta-G solvation = -13014.723870 eV Core-core repulsion = 10947.357984 eV Total energy + Delta-G solvation = -2067.365886 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.02008 -35.86201 -32.97489 -30.03173 -27.59508 -25.36914 -24.95020 -24.57979 -20.79864 -19.97284 -19.11578 -17.05540 -15.51155 -14.90850 -14.32408 -13.75684 -13.72422 -12.94054 -12.49004 -12.26782 -12.09628 -11.85410 -11.55597 -11.28004 -10.90334 -10.86537 -10.64714 -10.54915 -10.29358 -10.11672 -10.03104 -9.89959 -9.58431 -8.49153 -8.30070 -7.33243 -6.33755 -4.07267 3.44010 3.46239 3.62169 4.52742 4.76935 4.83200 4.92151 5.05744 5.34137 5.41355 5.60913 5.76340 5.88506 5.93452 5.96578 6.04997 6.10076 6.19042 6.34386 6.43099 6.53716 6.64593 6.70380 6.81775 6.99234 7.09013 7.22404 7.70987 7.93826 8.14574 8.55632 8.67383 8.89332 9.64914 11.01932 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042696 B = 0.009404 C = 0.008190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.639923 B = 2976.887423 C = 3418.128659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.035 0.965 4 N -0.680 5.680 5 C 0.199 3.801 6 H 0.000 1.000 7 C -0.128 4.128 8 C -0.606 4.606 9 H 0.052 0.948 10 C 0.023 3.977 11 N -0.911 5.911 12 Si 1.068 2.932 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.286 1.286 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.133 4.133 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.335 0.665 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.039 0.961 27 H 0.271 0.729 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -3.447 -11.241 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.053 0.947 4 N -0.312 5.312 5 C 0.090 3.910 6 H 0.018 0.982 7 C -0.187 4.187 8 C -0.645 4.645 9 H 0.070 0.930 10 C -0.182 4.182 11 N -0.547 5.547 12 Si 0.896 3.104 13 H -0.214 1.214 14 H -0.216 1.216 15 H -0.212 1.212 16 C -0.128 4.128 17 C -0.176 4.176 18 C -0.180 4.180 19 C -0.171 4.171 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.153 0.847 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.393 -3.194 -9.724 10.330 hybrid contribution -0.123 0.016 -1.515 1.520 sum -1.516 -3.178 -11.239 11.778 Atomic orbital electron populations 1.21790 0.95839 1.01602 1.00077 1.21539 0.95090 0.95445 0.89592 0.94672 1.60716 1.34160 1.32140 1.04134 1.19276 0.94412 0.89530 0.87740 0.98206 1.21826 0.96456 1.00489 0.99887 1.22293 1.04562 1.17661 1.19980 0.93000 1.25739 1.02352 0.93530 0.96583 1.70740 1.19471 1.24938 1.39563 0.83569 0.75063 0.75821 0.75898 1.21376 1.21575 1.21165 1.22726 0.95743 1.00233 0.94054 1.22985 0.96867 1.02092 0.95659 1.22834 0.97200 1.01279 0.96696 1.22880 0.96517 1.00826 0.96874 0.92988 0.93713 0.92668 0.84746 0.92739 0.96526 0.94188 0.91717 0.89126 0.90201 0.91638 0.90595 0.91930 0.91898 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.30 37.15 0.35 -1.94 16 2 C 0.09 1.73 2.38 -67.72 -0.16 1.57 16 3 H 0.04 0.72 7.14 -51.93 -0.37 0.35 16 4 N -0.68 -14.83 6.22 -100.96 -0.63 -15.46 16 5 C 0.20 5.09 2.31 -68.87 -0.16 4.93 16 6 H 0.00 0.01 6.56 -51.93 -0.34 -0.33 16 7 C -0.13 -3.19 9.20 37.15 0.34 -2.85 16 8 C -0.61 -17.03 8.53 -34.44 -0.29 -17.32 16 9 H 0.05 1.45 7.41 -52.48 -0.39 1.06 16 10 C 0.02 0.64 5.22 -17.82 -0.09 0.55 16 11 N -0.91 -27.41 12.77 55.43 0.71 -26.70 16 12 Si 1.07 25.32 29.91 -169.99 -5.08 20.23 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 C -0.11 -1.64 3.10 -89.81 -0.28 -1.92 16 17 C -0.14 -2.01 7.52 -25.82 -0.19 -2.20 16 18 C -0.14 -1.71 8.09 -25.82 -0.21 -1.92 16 19 C -0.13 -1.69 6.67 -25.92 -0.17 -1.86 16 20 H 0.05 0.95 6.72 -51.93 -0.35 0.60 16 21 H 0.04 0.64 7.34 -51.93 -0.38 0.26 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.33 7.33 7.37 -39.29 -0.29 7.04 16 24 H 0.05 1.45 6.16 -51.93 -0.32 1.13 16 25 H 0.02 0.36 6.69 -51.93 -0.35 0.02 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.27 8.17 6.14 -40.82 -0.25 7.92 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -29.13 267.13 -7.48 -36.61 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.63 Total: 4.25 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -0.87 Total: -22.96 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.08 Total: -42.16 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.13 -7.48 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124061628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.230 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds