Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47043 * 2 1 4 4 N 1.46901 * 109.46865 * 119.99752 * 2 1 3 5 5 C 1.46903 * 111.00209 * 272.89538 * 4 2 1 6 6 H 1.09001 * 109.46584 * 344.01604 * 5 4 2 7 7 C 1.52993 * 109.47052 * 104.01427 * 5 4 2 8 8 C 1.50694 * 109.47306 * 224.01816 * 5 4 2 9 9 H 1.08005 * 120.00291 * 355.94736 * 8 5 4 10 10 C 1.37882 * 120.00066 * 175.94266 * 8 5 4 11 11 N 1.31516 * 119.99582 * 353.94988 * 10 8 5 12 12 Si 1.86794 * 120.00113 * 173.94744 * 10 8 5 13 13 H 1.48505 * 109.46946 * 270.00348 * 12 10 8 14 14 H 1.48504 * 109.47117 * 29.99994 * 12 10 8 15 15 H 1.48493 * 109.47394 * 150.00184 * 12 10 8 16 16 C 1.52999 * 109.47282 * 239.99428 * 2 1 3 17 17 C 1.53781 * 113.61353 * 159.13847 * 16 2 1 18 18 C 1.53964 * 87.01980 * 220.05075 * 17 16 2 19 19 C 1.53781 * 113.61118 * 61.53153 * 16 2 1 20 20 H 1.08991 * 109.47449 * 304.62610 * 1 2 3 21 21 H 1.09001 * 109.46997 * 64.62911 * 1 2 3 22 22 H 1.09005 * 109.47275 * 184.62331 * 1 2 3 23 23 H 1.00900 * 111.00050 * 148.94228 * 4 2 1 24 24 H 1.08998 * 109.47117 * 176.45090 * 7 5 4 25 25 H 1.09004 * 109.47418 * 296.45289 * 7 5 4 26 26 H 1.09005 * 109.47363 * 56.45129 * 7 5 4 27 27 H 0.96997 * 120.00060 * 354.35708 * 11 10 8 28 28 H 1.09001 * 112.85208 * 290.33774 * 16 2 1 29 29 H 1.08996 * 113.61608 * 334.56626 * 17 16 2 30 30 H 1.09003 * 113.61525 * 105.47624 * 17 16 2 31 31 H 1.09001 * 113.53202 * 270.80985 * 18 17 16 32 32 H 1.08991 * 113.74365 * 139.94318 * 18 17 16 33 33 H 1.08997 * 113.61453 * 254.52725 * 19 16 2 34 34 H 1.08997 * 113.61583 * 25.43612 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1297 0.2340 2.3342 6 1 2.0992 1.2607 1.9692 7 6 0.9648 0.0006 3.2981 8 6 3.4323 -0.0049 3.0532 9 1 4.0805 -0.8112 2.7429 10 6 3.7969 0.8060 4.1071 11 7 3.0688 1.8587 4.4092 12 14 5.3248 0.4093 5.1057 13 1 4.9590 -0.4782 6.2388 14 1 6.3176 -0.2768 4.2402 15 1 5.9127 1.6672 5.6321 16 6 2.0400 -0.7214 -1.2491 17 6 3.4867 -0.3578 -1.6229 18 6 3.0234 -0.3621 -3.0912 19 6 1.6121 -0.0511 -2.5654 20 1 -0.3634 0.5839 0.8456 21 1 -0.3633 0.4403 -0.9286 22 1 -0.3634 -1.0244 0.0828 23 1 2.9009 -1.1493 1.0189 24 1 1.0806 0.6437 4.1705 25 1 0.0257 0.2343 2.7965 26 1 0.9581 -1.0426 3.6141 27 1 2.3234 2.1117 3.8425 28 1 1.8520 -1.7947 -1.2245 29 1 3.7963 0.6244 -1.2657 30 1 4.2080 -1.1409 -1.3894 31 1 3.1056 -1.3376 -3.5706 32 1 3.4533 0.4411 -3.6894 33 1 0.8222 -0.5870 -3.0916 34 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124061628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -18.234024 kcal Electronic energy + Delta-G solvation = -13015.498066 eV Core-core repulsion = 10947.357984 eV Total energy + Delta-G solvation = -2068.140082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.26980 -37.65620 -34.86842 -31.84669 -29.36553 -26.90773 -26.44126 -26.09414 -22.55099 -21.66022 -20.34276 -19.08209 -16.94137 -16.28842 -15.88599 -15.62339 -15.46389 -14.57616 -14.21449 -13.66702 -13.42509 -13.36142 -13.20595 -12.95287 -12.62091 -12.44378 -12.41005 -12.23067 -11.95562 -11.91567 -11.36096 -11.12066 -10.98870 -10.58188 -10.44679 -9.17400 -8.61324 -6.36739 1.51941 1.59996 1.77465 2.55327 3.15192 3.42326 3.70444 3.76729 3.92422 4.00707 4.34091 4.41950 4.56493 4.69043 4.78221 4.83063 4.84121 4.89420 4.91783 5.00091 5.05168 5.07736 5.12533 5.19910 5.35199 5.39984 5.60698 5.64333 5.86276 6.03740 6.46928 6.59763 6.85855 7.44724 8.73297 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042696 B = 0.009404 C = 0.008190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.639923 B = 2976.887423 C = 3418.128659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.091 3.909 3 H 0.009 0.991 4 N -0.676 5.676 5 C 0.203 3.797 6 H -0.030 1.030 7 C -0.116 4.116 8 C -0.619 4.619 9 H 0.050 0.950 10 C -0.027 4.027 11 N -0.933 5.933 12 Si 1.115 2.885 13 H -0.274 1.274 14 H -0.271 1.271 15 H -0.285 1.285 16 C -0.109 4.109 17 C -0.148 4.148 18 C -0.127 4.127 19 C -0.125 4.125 20 H 0.031 0.969 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.332 0.668 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -4.609 -12.591 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.027 0.973 4 N -0.306 5.306 5 C 0.093 3.907 6 H -0.013 1.013 7 C -0.175 4.175 8 C -0.657 4.657 9 H 0.069 0.931 10 C -0.226 4.226 11 N -0.570 5.570 12 Si 0.938 3.062 13 H -0.200 1.200 14 H -0.196 1.196 15 H -0.211 1.211 16 C -0.128 4.128 17 C -0.186 4.186 18 C -0.165 4.165 19 C -0.163 4.163 20 H 0.050 0.950 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.150 0.850 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.235 -4.367 -11.102 11.994 hybrid contribution -0.209 0.385 -1.140 1.221 sum -1.444 -3.983 -12.242 12.954 Atomic orbital electron populations 1.21736 0.94354 1.01825 1.00758 1.21650 0.96202 0.94193 0.89855 0.97325 1.60707 1.33850 1.31394 1.04690 1.19111 0.93914 0.88636 0.88999 1.01292 1.21664 0.97145 0.99706 0.98936 1.22633 1.05517 1.17357 1.20206 0.93143 1.27189 1.04605 0.92909 0.97889 1.70861 1.19954 1.26230 1.39940 0.82954 0.72098 0.75999 0.75193 1.19993 1.19612 1.21079 1.22732 0.96313 1.00339 0.93429 1.23004 0.96591 1.00857 0.98143 1.22795 0.96044 1.02742 0.94879 1.22856 0.97765 1.00604 0.95085 0.95018 0.90830 0.92079 0.84998 0.95039 0.94646 0.94255 0.93103 0.88461 0.92394 0.91671 0.88705 0.90826 0.89770 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.30 71.98 0.67 -3.52 16 2 C 0.09 3.33 2.38 44.91 0.11 3.44 16 3 H 0.01 0.37 7.14 -2.39 -0.02 0.35 16 4 N -0.68 -29.57 6.22 -473.34 -2.94 -32.51 16 5 C 0.20 10.61 2.31 44.16 0.10 10.71 16 6 H -0.03 -1.76 6.56 -2.39 -0.02 -1.78 16 7 C -0.12 -5.86 9.20 71.98 0.66 -5.20 16 8 C -0.62 -35.16 8.53 25.60 0.22 -34.94 16 9 H 0.05 2.82 7.41 -2.91 -0.02 2.80 16 10 C -0.03 -1.56 5.22 84.66 0.44 -1.12 16 11 N -0.93 -57.27 12.77 21.45 0.27 -56.99 16 12 Si 1.12 50.66 29.91 68.60 2.05 52.71 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 C -0.11 -3.12 3.10 -10.27 -0.03 -3.16 16 17 C -0.15 -4.15 7.52 31.18 0.23 -3.92 16 18 C -0.13 -2.68 8.09 31.18 0.25 -2.43 16 19 C -0.13 -2.82 6.67 31.12 0.21 -2.61 16 20 H 0.03 1.13 6.72 -2.39 -0.02 1.12 16 21 H 0.07 1.95 7.34 -2.39 -0.02 1.93 16 22 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.33 14.60 7.37 -89.69 -0.66 13.94 16 24 H 0.03 1.70 6.16 -2.39 -0.01 1.69 16 25 H 0.03 1.60 6.69 -2.38 -0.02 1.59 16 26 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.26 16.15 6.14 -92.71 -0.57 15.58 16 28 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -62.69 267.13 2.84 -59.85 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.60 Total: 19.68 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 2.86 Total: -42.74 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.67 Total: -89.50 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -62.69 2.84 -59.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124061628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.615 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds