Wall clock time and date at job start Mon Mar 30 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 H 1.09000 * 109.47473 * 34.99539 * 13 12 2 15 15 C 1.53003 * 109.47021 * 274.99736 * 13 12 2 16 16 C 1.53000 * 109.47187 * 154.99992 * 13 12 2 17 17 C 1.53777 * 113.61200 * 279.13854 * 16 13 12 18 18 C 1.53964 * 87.01859 * 220.04590 * 17 16 13 19 19 C 1.53774 * 113.61575 * 181.52852 * 16 13 12 20 20 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 22 22 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 23 23 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 24 24 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 25 25 H 1.09007 * 109.47106 * 60.00477 * 15 13 12 26 26 H 1.08993 * 109.47190 * 180.02562 * 15 13 12 27 27 H 1.08996 * 109.47234 * 300.00507 * 15 13 12 28 28 H 1.09004 * 112.84777 * 50.32969 * 16 13 12 29 29 H 1.09007 * 113.61513 * 334.56135 * 17 16 13 30 30 H 1.08995 * 113.61817 * 105.47087 * 17 16 13 31 31 H 1.08997 * 113.53739 * 270.81258 * 18 17 16 32 32 H 1.08993 * 113.74511 * 139.93985 * 18 17 16 33 33 H 1.09005 * 113.61621 * 254.52993 * 19 16 13 34 34 H 1.09003 * 113.61905 * 25.42997 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2577 0.9331 2.2907 15 6 3.4111 0.9809 2.3224 16 6 1.9770 -0.5795 3.6455 17 6 0.5345 -0.9589 4.0197 18 6 0.9154 -0.6443 5.4779 19 6 1.9953 0.2928 4.9117 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7090 1.1613 -3.4844 24 1 2.9173 -1.1205 1.0288 25 1 3.4863 1.5525 1.3972 26 1 3.4579 1.6596 3.1739 27 1 4.2359 0.2706 2.3786 28 1 2.6726 -1.4179 3.6827 29 1 -0.2154 -0.2828 3.6088 30 1 0.3000 -2.0090 3.8456 31 1 1.3198 -1.5012 6.0167 32 1 0.1344 -0.1252 6.0333 33 1 2.9385 0.2518 5.4566 34 1 1.6456 1.3117 4.7451 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124061779.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:13 Heat of formation + Delta-G solvation = -14.369200 kcal Electronic energy + Delta-G solvation = -12961.462388 eV Core-core repulsion = 10893.489897 eV Total energy + Delta-G solvation = -2067.972491 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08437 -37.43941 -34.75115 -32.01815 -28.68070 -27.34899 -26.52475 -26.02026 -22.56366 -21.27754 -20.23132 -18.48702 -16.91539 -16.40491 -15.94821 -15.58706 -15.15525 -14.46528 -14.06851 -13.68365 -13.39035 -13.26110 -13.15027 -12.85377 -12.57660 -12.45769 -12.32907 -12.21013 -12.03068 -11.76265 -11.25430 -11.00744 -10.96354 -10.73750 -10.56720 -8.91156 -8.13284 -6.27201 1.40293 1.41954 1.53938 2.41234 3.15137 3.55319 3.83352 3.94142 4.05415 4.25288 4.41694 4.49283 4.59731 4.83303 4.85541 4.93276 4.97404 5.02293 5.07074 5.14241 5.16300 5.22745 5.28290 5.33798 5.49993 5.54026 5.69891 5.76316 5.89596 6.23498 6.53739 6.84220 7.06342 7.43553 8.92687 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063109 B = 0.008063 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.567445 B = 3471.874738 C = 3570.787553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.218 3.782 3 H -0.031 1.031 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.681 5.681 13 C 0.092 3.908 14 H 0.048 0.952 15 C -0.169 4.169 16 C -0.094 4.094 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.129 4.129 20 H 0.025 0.975 21 H 0.018 0.982 22 H 0.055 0.945 23 H 0.262 0.738 24 H 0.330 0.670 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -1.456 12.455 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 H -0.014 1.014 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.310 5.310 13 C -0.019 4.019 14 H 0.067 0.933 15 C -0.227 4.227 16 C -0.113 4.113 17 C -0.170 4.170 18 C -0.169 4.169 19 C -0.167 4.167 20 H 0.044 0.956 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.630 -1.593 12.484 12.690 hybrid contribution 0.826 0.395 -1.486 1.746 sum 2.456 -1.198 10.998 11.332 Atomic orbital electron populations 1.21528 0.98108 0.98589 0.98663 1.18855 0.92345 0.90808 0.87066 1.01388 1.21655 1.31464 1.12569 0.91757 0.92369 1.25751 0.95219 0.95698 1.02089 1.70038 1.37651 1.24165 1.24044 0.85439 0.78117 0.78603 0.79049 1.19054 1.20579 1.20605 1.60716 1.32001 1.33134 1.05197 1.21594 0.95855 0.93001 0.91410 0.93324 1.22359 0.98486 1.00896 1.01007 1.22471 0.97788 0.98478 0.92518 1.22835 0.96562 1.00799 0.96845 1.22831 0.98772 0.99836 0.95461 1.22896 0.99789 0.98162 0.95831 0.95550 0.96340 0.92660 0.92895 0.85292 0.95385 0.90742 0.92048 0.89517 0.91992 0.92411 0.89254 0.90883 0.90345 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.17 71.98 0.66 -5.07 16 2 C 0.22 11.41 2.41 44.17 0.11 11.52 16 3 H -0.03 -1.82 7.11 -2.38 -0.02 -1.84 16 4 C -0.54 -30.13 8.59 25.60 0.22 -29.91 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.68 -29.48 6.05 -473.29 -2.86 -32.35 16 13 C 0.09 3.29 2.20 44.92 0.10 3.39 16 14 H 0.05 1.93 6.95 -2.39 -0.02 1.92 16 15 C -0.17 -5.49 8.96 71.98 0.65 -4.84 16 16 C -0.09 -2.69 3.43 -10.27 -0.04 -2.72 16 17 C -0.13 -3.74 7.65 31.18 0.24 -3.50 16 18 C -0.13 -2.80 8.09 31.18 0.25 -2.55 16 19 C -0.13 -2.91 6.75 31.12 0.21 -2.70 16 20 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.02 0.85 7.43 -2.38 -0.02 0.83 16 22 H 0.05 3.12 6.07 -2.39 -0.01 3.11 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.33 14.04 7.96 -89.69 -0.71 13.33 16 25 H 0.03 1.05 7.43 -2.38 -0.02 1.03 16 26 H 0.07 2.02 7.50 -2.39 -0.02 2.00 16 27 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.06 1.92 7.99 -2.38 -0.02 1.90 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -60.04 270.22 2.59 -57.45 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.34 Total: 17.82 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.85 Total: -35.31 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.62 Total: -86.14 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.04 2.59 -57.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124061779.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.082 kcal (2) G-P(sol) polarization free energy of solvation -60.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds