Wall clock time and date at job start Mon Mar 30 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47211 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46838 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49977 * 243.74358 * 16 15 14 18 18 C 1.53006 * 117.49874 * 175.08515 * 16 15 14 19 19 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 22 22 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 23 23 H 1.00900 * 110.99581 * 151.04678 * 12 2 1 24 24 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 25 25 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 26 26 H 1.09008 * 109.47067 * 300.00177 * 14 13 12 27 27 H 1.08997 * 109.46978 * 59.99938 * 14 13 12 28 28 H 1.08991 * 109.46837 * 299.99790 * 15 14 13 29 29 H 1.09002 * 109.46940 * 60.00123 * 15 14 13 30 30 H 1.08995 * 115.55435 * 29.41856 * 16 15 14 31 31 H 1.09000 * 117.49955 * 0.02562 * 17 16 15 32 32 H 1.08998 * 117.50462 * 145.02390 * 17 16 15 33 33 H 1.08994 * 117.50127 * 214.97650 * 18 16 15 34 34 H 1.09010 * 117.49351 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6610 0.4201 4.7695 16 6 3.1740 -0.3355 5.9969 17 6 2.2236 -0.4773 7.1875 18 6 3.4206 0.4730 7.2722 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.7083 1.1609 -3.4845 23 1 2.9173 -1.1205 1.0288 24 1 2.7589 1.0462 2.1182 25 1 1.0871 0.6164 2.5526 26 1 1.9199 -1.3567 3.8031 27 1 3.5915 -0.9263 3.3684 28 1 3.3369 1.2441 4.5409 29 1 1.6653 0.8132 4.9752 30 1 3.8483 -1.1664 5.7896 31 1 1.2327 -0.0325 7.0962 32 1 2.2729 -1.4012 7.7637 33 1 4.2569 0.1738 7.9040 34 1 3.2169 1.5433 7.2368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124864768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:07 Heat of formation + Delta-G solvation = 0.815002 kcal Electronic energy + Delta-G solvation = -12218.903329 eV Core-core repulsion = 10151.589275 eV Total energy + Delta-G solvation = -2067.314055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.82516 -36.04155 -33.35351 -31.42783 -28.28679 -25.39668 -24.56714 -22.45513 -21.01027 -20.45041 -19.60742 -16.41564 -15.70966 -15.13508 -14.62446 -14.43856 -13.51369 -13.45907 -12.93448 -12.09755 -11.87072 -11.67627 -11.56780 -11.25550 -10.94478 -10.87175 -10.69932 -10.49901 -10.32288 -10.14006 -10.07388 -9.85655 -9.65804 -8.78936 -8.44299 -7.20297 -5.99744 -4.06238 3.32863 3.37046 3.39996 3.75247 4.41922 4.60587 4.88108 4.89592 5.29058 5.30522 5.37016 5.45857 5.54254 5.71963 5.81847 5.96973 6.03654 6.07792 6.16310 6.20121 6.36292 6.63826 6.69555 6.93526 7.18375 7.28268 7.55722 7.81100 7.94294 8.31357 8.44840 8.73194 9.05068 9.59544 11.06615 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.083741 B = 0.005493 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.282174 B = 5096.581858 C = 5246.672851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.060 3.940 14 C -0.112 4.112 15 C -0.088 4.088 16 C -0.147 4.147 17 C -0.183 4.183 18 C -0.187 4.187 19 H 0.080 0.920 20 H 0.031 0.969 21 H 0.003 0.997 22 H 0.261 0.739 23 H 0.329 0.671 24 H 0.016 0.984 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -0.680 14.038 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.070 4.070 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.165 4.165 17 C -0.220 4.220 18 C -0.224 4.224 19 H 0.098 0.902 20 H 0.050 0.950 21 H 0.022 0.978 22 H 0.071 0.929 23 H 0.146 0.854 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.597 -0.797 14.047 14.307 hybrid contribution 1.047 0.127 -1.058 1.494 sum 3.644 -0.670 12.989 13.507 Atomic orbital electron populations 1.21708 0.97954 0.99278 0.99267 1.19104 0.92618 0.92300 0.85738 0.98281 1.21247 1.31455 1.12477 0.90532 0.92292 1.24929 0.95069 0.95006 0.99039 1.69892 1.36636 1.22930 1.23518 0.86576 0.79053 0.79786 0.82062 1.20190 1.21302 1.20343 1.60724 1.31949 1.33320 1.06166 1.21907 0.99504 0.94158 0.91461 1.21552 1.01169 0.98506 0.93779 1.21167 1.00672 0.97819 0.92966 1.22390 1.02604 1.01815 0.89698 1.23029 0.95180 1.01284 1.02459 1.22969 1.00168 0.97849 1.01384 0.90166 0.95011 0.97768 0.92900 0.85435 0.96595 0.92087 0.91423 0.92512 0.91862 0.91941 0.87919 0.88843 0.89165 0.89173 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 9.19 37.16 0.34 -2.85 16 2 C 0.21 5.52 2.60 -68.86 -0.18 5.34 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.69 -15.36 6.30 -107.94 -0.68 -16.04 16 13 C 0.06 1.12 5.48 -3.82 -0.02 1.09 16 14 C -0.11 -1.67 5.43 -26.73 -0.15 -1.81 16 15 C -0.09 -1.11 5.50 -26.73 -0.15 -1.26 16 16 C -0.15 -1.63 5.73 -90.62 -0.52 -2.15 16 17 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 18 C -0.19 -1.81 10.26 -26.69 -0.27 -2.08 16 19 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.33 7.10 8.22 -39.29 -0.32 6.77 16 24 H 0.02 0.30 8.06 -51.93 -0.42 -0.11 16 25 H 0.06 1.17 7.44 -51.93 -0.39 0.78 16 26 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 30 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -28.73 278.69 -8.45 -37.18 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.97 Total: 2.51 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.61 Total: -19.06 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.05 Total: -41.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.73 -8.45 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124864768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.000 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds