Wall clock time and date at job start Mon Mar 30 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47211 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46838 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49977 * 243.74358 * 16 15 14 18 18 C 1.53006 * 117.49874 * 175.08515 * 16 15 14 19 19 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 22 22 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 23 23 H 1.00900 * 110.99581 * 151.04678 * 12 2 1 24 24 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 25 25 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 26 26 H 1.09008 * 109.47067 * 300.00177 * 14 13 12 27 27 H 1.08997 * 109.46978 * 59.99938 * 14 13 12 28 28 H 1.08991 * 109.46837 * 299.99790 * 15 14 13 29 29 H 1.09002 * 109.46940 * 60.00123 * 15 14 13 30 30 H 1.08995 * 115.55435 * 29.41856 * 16 15 14 31 31 H 1.09000 * 117.49955 * 0.02562 * 17 16 15 32 32 H 1.08998 * 117.50462 * 145.02390 * 17 16 15 33 33 H 1.08994 * 117.50127 * 214.97650 * 18 16 15 34 34 H 1.09010 * 117.49351 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6610 0.4201 4.7695 16 6 3.1740 -0.3355 5.9969 17 6 2.2236 -0.4773 7.1875 18 6 3.4206 0.4730 7.2722 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.7083 1.1609 -3.4845 23 1 2.9173 -1.1205 1.0288 24 1 2.7589 1.0462 2.1182 25 1 1.0871 0.6164 2.5526 26 1 1.9199 -1.3567 3.8031 27 1 3.5915 -0.9263 3.3684 28 1 3.3369 1.2441 4.5409 29 1 1.6653 0.8132 4.9752 30 1 3.8483 -1.1664 5.7896 31 1 1.2327 -0.0325 7.0962 32 1 2.2729 -1.4012 7.7637 33 1 4.2569 0.1738 7.9040 34 1 3.2169 1.5433 7.2368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124864768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:07 Heat of formation + Delta-G solvation = -15.943711 kcal Electronic energy + Delta-G solvation = -12219.630042 eV Core-core repulsion = 10151.589275 eV Total energy + Delta-G solvation = -2068.040767 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.80842 -37.72913 -35.10858 -33.12654 -30.06228 -27.41931 -26.13266 -23.21412 -22.41682 -21.82855 -21.13275 -18.49753 -16.95671 -16.69383 -16.17242 -15.66310 -15.21754 -14.83279 -14.65683 -13.67871 -13.53491 -13.13369 -12.81113 -12.69930 -12.49185 -12.41377 -12.31866 -12.20832 -12.02812 -11.72547 -11.63716 -11.02343 -10.85696 -10.68815 -10.57409 -9.06569 -8.13755 -6.28749 1.42644 1.45085 1.52745 2.41613 2.95233 3.14402 3.52140 3.90419 4.05551 4.13212 4.23715 4.30270 4.52722 4.70361 4.79171 4.81964 4.85150 4.93266 4.98353 5.06049 5.10019 5.21841 5.27211 5.29824 5.39030 5.45411 5.52054 5.66952 5.85015 6.20879 6.47193 6.77457 7.00122 7.41878 8.91977 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.083741 B = 0.005493 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.282174 B = 5096.581858 C = 5246.672851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.212 3.788 3 H -0.033 1.033 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.690 5.690 13 C 0.060 3.940 14 C -0.099 4.099 15 C -0.082 4.082 16 C -0.161 4.161 17 C -0.182 4.182 18 C -0.179 4.179 19 H 0.057 0.943 20 H 0.028 0.972 21 H 0.020 0.980 22 H 0.263 0.737 23 H 0.332 0.668 24 H 0.010 0.990 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -1.428 14.771 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 H -0.016 1.016 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.069 4.069 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.179 4.179 17 C -0.219 4.219 18 C -0.216 4.216 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.150 0.850 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.276 -1.549 14.803 15.240 hybrid contribution 0.827 0.393 -1.238 1.540 sum 4.103 -1.156 13.565 14.219 Atomic orbital electron populations 1.21539 0.97762 0.98841 0.98975 1.18946 0.92811 0.90728 0.87172 1.01563 1.21579 1.31906 1.12803 0.91639 0.92161 1.25781 0.95105 0.95672 1.02169 1.70024 1.37396 1.24116 1.24300 0.85495 0.78751 0.78628 0.78048 1.19565 1.20844 1.19471 1.60661 1.32209 1.33596 1.05564 1.21984 0.99299 0.93971 0.91667 1.21427 1.01078 0.98395 0.92797 1.21076 1.00845 0.97388 0.92697 1.22321 1.03625 1.02409 0.89543 1.23114 0.95200 1.01927 1.01679 1.23053 1.00398 0.97942 1.00169 0.92409 0.95313 0.96074 0.92777 0.85047 0.97182 0.92710 0.91638 0.91909 0.91854 0.91984 0.87706 0.88906 0.88108 0.87862 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 9.19 71.98 0.66 -5.21 16 2 C 0.21 11.28 2.60 44.17 0.11 11.40 16 3 H -0.03 -1.95 7.80 -2.39 -0.02 -1.97 16 4 C -0.54 -30.51 8.59 25.60 0.22 -30.30 16 5 H 0.06 3.30 7.62 -2.91 -0.02 3.28 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 8 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.69 -30.57 6.30 -495.42 -3.12 -33.69 16 13 C 0.06 2.23 5.48 86.30 0.47 2.71 16 14 C -0.10 -2.82 5.43 30.59 0.17 -2.66 16 15 C -0.08 -1.94 5.50 30.59 0.17 -1.78 16 16 C -0.16 -3.25 5.73 -10.79 -0.06 -3.31 16 17 C -0.18 -3.25 10.18 30.62 0.31 -2.94 16 18 C -0.18 -3.04 10.26 30.62 0.31 -2.73 16 19 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 20 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.33 14.24 8.22 -89.69 -0.74 13.50 16 24 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 25 H 0.05 2.08 7.44 -2.38 -0.02 2.06 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.47 7.87 -2.39 -0.02 1.45 16 30 H 0.10 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -60.20 278.69 2.27 -57.93 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.31 Total: 17.26 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 2.82 Total: -33.70 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.88 Total: -87.40 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.20 2.27 -57.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124864768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.983 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds