Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47135 * 274.97120 * 3 2 1 5 5 H 1.48496 * 109.47048 * 34.97741 * 3 2 1 6 6 H 1.48507 * 109.46955 * 154.97388 * 3 2 1 7 7 C 1.40600 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99545 * 186.30436 * 7 2 1 9 9 C 1.39177 * 120.00131 * 6.30889 * 7 2 1 10 10 S 1.75849 * 125.44862 * 352.04553 * 9 7 2 11 11 C 1.75683 * 91.41373 * 180.02562 * 10 9 7 12 12 C 1.33948 * 110.69314 * 359.97438 * 11 10 9 13 13 C 1.38443 * 115.30200 * 0.02562 * 12 11 10 14 14 C 1.46700 * 123.25482 * 179.97438 * 13 12 11 15 15 O 1.21620 * 119.99559 * 180.02562 * 14 13 12 16 16 O 1.34895 * 119.99933 * 0.02562 * 14 13 12 17 17 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 18 18 H 1.07997 * 124.65318 * 179.73555 * 11 10 9 19 19 H 1.08002 * 122.34773 * 180.02562 * 12 11 10 20 20 H 0.96704 * 117.00108 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3817 2.1071 -1.3948 5 1 1.4933 2.6200 0.8026 6 1 3.5855 1.4120 0.5923 7 6 2.0081 -1.2177 0.0005 8 1 3.0832 -1.2204 0.1033 9 6 1.3185 -2.4194 -0.1314 10 16 -0.4306 -2.5992 -0.1093 11 6 -0.2982 -4.3373 -0.3280 12 6 0.9866 -4.7080 -0.4071 13 6 1.9067 -3.6789 -0.3028 14 6 3.3575 -3.8875 -0.3655 15 8 4.1129 -2.9395 -0.2666 16 8 3.8535 -5.1307 -0.5328 17 1 -0.4850 0.8401 -0.0004 18 1 -1.1374 -5.0146 -0.3865 19 1 1.2837 -5.7374 -0.5427 20 1 4.8159 -5.2183 -0.5684 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137942525.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = -112.166905 kcal Electronic energy + Delta-G solvation = -10265.829786 eV Core-core repulsion = 8131.151394 eV Total energy + Delta-G solvation = -2134.678392 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.014 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60833 -37.56966 -36.48951 -35.96355 -31.17434 -27.97613 -25.01891 -22.43303 -20.35878 -20.10029 -18.43432 -17.46098 -16.49754 -16.11534 -16.00028 -14.90792 -14.33118 -14.04340 -13.64336 -13.39090 -13.16934 -12.78293 -12.18790 -12.07407 -11.94828 -11.44156 -11.24471 -10.69953 -9.61091 -9.07848 -8.85852 -6.77831 0.57136 1.32690 1.34193 1.45566 1.51234 1.53459 1.94774 2.14086 2.46568 2.92639 3.08323 4.62286 4.79221 4.87022 5.17105 5.50796 5.64763 5.91904 5.99173 6.19104 6.33398 6.42359 7.55293 7.78180 Molecular weight = 198.01amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.016881 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.960797 B = 1658.284518 C = 2437.960883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.014 3.986 3 Si 1.011 2.989 4 H -0.253 1.253 5 H -0.245 1.245 6 H -0.261 1.261 7 C -0.363 4.363 8 H 0.114 0.886 9 C 0.034 3.966 10 S 0.112 5.888 11 C -0.392 4.392 12 C -0.042 4.042 13 C -0.402 4.402 14 C 0.536 3.464 15 O -0.588 6.588 16 O -0.522 6.522 17 H 0.320 0.680 18 H 0.151 0.849 19 H 0.123 0.877 20 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 1.159 -0.191 1.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.177 1.177 5 H -0.169 1.169 6 H -0.185 1.185 7 C -0.397 4.397 8 H 0.132 0.868 9 C -0.087 4.087 10 S 0.370 5.630 11 C -0.525 4.525 12 C -0.070 4.070 13 C -0.408 4.408 14 C 0.390 3.610 15 O -0.486 6.486 16 O -0.335 6.335 17 H 0.134 0.866 18 H 0.169 0.831 19 H 0.141 0.859 20 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.214 2.365 -0.008 2.658 hybrid contribution 2.020 -0.823 -0.223 2.193 sum 0.806 1.542 -0.231 1.755 Atomic orbital electron populations 1.68808 1.09135 1.33642 1.26952 1.27539 0.95999 1.06098 0.91409 0.84717 0.78758 0.73287 0.80401 1.17745 1.16854 1.18505 1.20344 0.98012 0.89776 1.31528 0.86830 1.22198 0.96434 0.95341 0.94731 1.84258 1.02952 0.98623 1.77214 1.25574 0.99568 1.02040 1.25319 1.19625 0.92035 0.98052 0.97291 1.17825 0.89662 0.94148 1.39202 1.20258 0.89034 0.79380 0.72306 1.90654 1.61222 1.43237 1.53508 1.84590 1.30828 1.31868 1.86242 0.86626 0.83104 0.85899 0.72811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.58 10.69 21.94 0.23 -34.34 14 2 C 0.01 0.63 5.50 85.46 0.47 1.10 14 3 Si 1.01 34.81 29.57 68.60 2.03 36.83 14 4 H -0.25 -8.37 7.11 99.48 0.71 -7.67 14 5 H -0.25 -7.45 7.11 99.48 0.71 -6.75 14 6 H -0.26 -9.37 7.11 99.48 0.71 -8.66 14 7 C -0.36 -19.38 8.75 23.07 0.20 -19.18 14 8 H 0.11 6.35 5.56 -2.91 -0.02 6.33 14 9 C 0.03 1.89 6.21 22.94 0.14 2.03 14 10 S 0.11 5.54 20.28 -56.49 -1.15 4.40 14 11 C -0.39 -18.30 11.17 66.84 0.75 -17.56 14 12 C -0.04 -2.05 9.75 21.34 0.21 -1.84 14 13 C -0.40 -21.50 5.89 -20.58 -0.12 -21.62 14 14 C 0.54 27.05 8.28 70.03 0.58 27.63 14 15 O -0.59 -31.89 15.00 19.44 0.29 -31.60 14 16 O -0.52 -20.78 13.03 -58.09 -0.76 -21.53 14 17 H 0.32 12.42 8.29 -92.71 -0.77 11.66 14 18 H 0.15 6.09 8.06 -2.91 -0.02 6.07 14 19 H 0.12 5.36 7.94 -2.91 -0.02 5.34 14 20 H 0.41 11.63 9.11 -74.05 -0.67 10.95 14 Total: -1.00 -61.91 204.38 3.49 -58.42 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.61 Total: 17.26 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 2.23 Total: -29.43 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.23 Total: -34.34 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.47 Total: -53.14 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.15 Total: 4.40 kcal Total: -61.91 3.49 -58.42 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137942525.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.749 kcal (2) G-P(sol) polarization free energy of solvation -61.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds