Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47201 * 2 1 4 4 C 1.50700 * 109.47245 * 239.99442 * 2 1 3 5 5 H 1.07993 * 120.00714 * 244.89935 * 4 2 1 6 6 C 1.37880 * 119.99348 * 64.89997 * 4 2 1 7 7 N 1.31518 * 119.99592 * 195.60723 * 6 4 2 8 8 Si 1.86795 * 120.00473 * 15.60561 * 6 4 2 9 9 H 1.48496 * 109.47399 * 95.17157 * 8 6 4 10 10 H 1.48502 * 109.47341 * 215.17255 * 8 6 4 11 11 H 1.48501 * 109.46883 * 335.17316 * 8 6 4 12 12 C 1.53003 * 109.46777 * 120.00006 * 2 1 3 13 13 C 1.52995 * 109.47324 * 293.82692 * 12 2 1 14 14 H 1.09004 * 109.53374 * 53.87857 * 13 12 2 15 15 C 1.53123 * 109.50698 * 293.78545 * 13 12 2 16 16 C 1.53117 * 109.16166 * 182.40263 * 15 13 12 17 17 C 1.53036 * 109.27803 * 57.65277 * 16 15 13 18 18 N 1.46843 * 109.52427 * 300.81841 * 17 16 15 19 19 C 1.46842 * 111.19767 * 61.74223 * 18 17 16 20 20 H 1.09000 * 109.47347 * 305.36629 * 1 2 3 21 21 H 1.08998 * 109.47018 * 65.36308 * 1 2 3 22 22 H 1.09006 * 109.47467 * 185.36283 * 1 2 3 23 23 H 0.97007 * 120.00092 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.46910 * 173.83057 * 12 2 1 25 25 H 1.08996 * 109.47487 * 53.83121 * 12 2 1 26 26 H 1.09001 * 109.52274 * 62.49466 * 15 13 12 27 27 H 1.08995 * 109.51743 * 302.30935 * 15 13 12 28 28 H 1.09002 * 109.50031 * 297.70913 * 16 15 13 29 29 H 1.09001 * 109.50240 * 177.59704 * 16 15 13 30 30 H 1.09009 * 109.45605 * 180.80576 * 17 16 15 31 31 H 1.08994 * 109.45258 * 60.83332 * 17 16 15 32 32 H 1.00910 * 110.99924 * 297.64703 * 18 17 16 33 33 H 1.09005 * 109.46411 * 58.27290 * 19 18 17 34 34 H 1.09001 * 109.46708 * 178.24314 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5864 -1.6324 -1.1333 6 6 1.7845 -0.1835 -2.4801 7 7 1.9408 -0.9302 -3.5514 8 14 1.2269 1.5910 -2.6518 9 1 2.4045 2.4569 -2.9139 10 1 0.2697 1.7020 -3.7817 11 1 0.5631 2.0249 -1.3963 12 6 2.0399 -0.7213 1.2493 13 6 1.6605 0.0839 2.4937 14 1 0.5872 0.2744 2.4913 15 6 2.4160 1.4158 2.4909 16 6 2.0768 2.1887 3.7684 17 6 2.4404 1.3363 4.9862 18 7 1.6914 0.0740 4.9431 19 6 2.0361 -0.7074 3.7486 20 1 -0.3634 0.5948 0.8380 21 1 -0.3633 0.4284 -0.9341 22 1 -0.3634 -1.0232 0.0961 23 1 1.7668 -0.5594 -4.4308 24 1 3.1243 -0.8179 1.1958 25 1 1.5892 -1.7121 1.3063 26 1 2.1186 2.0014 1.6210 27 1 3.4886 1.2259 2.4539 28 1 1.0101 2.4122 3.7860 29 1 2.6445 3.1188 3.7925 30 1 2.1868 1.8781 5.8975 31 1 3.5096 1.1248 4.9751 32 1 0.6974 0.2414 4.9912 33 1 3.1073 -0.9094 3.7433 34 1 1.4890 -1.6501 3.7607 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167465693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -48.617571 kcal Electronic energy + Delta-G solvation = -13103.617446 eV Core-core repulsion = 11034.159834 eV Total energy + Delta-G solvation = -2069.457612 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07794 -36.90298 -34.22746 -32.33844 -31.76225 -27.29447 -26.85119 -24.58470 -22.97517 -21.52015 -20.36181 -18.80973 -16.79037 -16.73618 -15.84528 -15.61729 -15.21658 -14.91419 -14.40379 -14.24538 -13.95248 -13.44861 -13.09109 -12.90468 -12.74435 -12.33439 -12.18034 -12.11111 -11.77059 -11.62693 -11.49065 -11.21208 -11.02159 -10.93523 -10.49386 -9.18224 -8.31064 -6.28620 1.31713 1.35307 1.46376 2.35463 3.04872 3.45554 3.84109 3.95495 4.08190 4.19571 4.44129 4.56831 4.57419 4.65873 4.71496 4.78538 4.80695 4.99643 5.05968 5.08722 5.13569 5.17947 5.20829 5.31966 5.37680 5.49041 5.65746 5.74941 5.85204 6.11834 6.35761 6.54653 6.77897 7.34998 8.86356 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055722 B = 0.009357 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.377917 B = 2991.667328 C = 3224.484956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 H 0.026 0.974 4 C -0.525 4.525 5 H 0.027 0.973 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.931 3.069 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.228 1.228 12 C -0.084 4.084 13 C -0.115 4.115 14 H 0.070 0.930 15 C -0.118 4.118 16 C -0.150 4.150 17 C 0.058 3.942 18 N -0.689 5.689 19 C 0.067 3.933 20 H 0.054 0.946 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.264 0.736 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 7.046 16.051 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.008 4.008 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.045 0.955 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.755 3.245 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.151 1.151 12 C -0.122 4.122 13 C -0.135 4.135 14 H 0.089 0.911 15 C -0.156 4.156 16 C -0.189 4.189 17 C -0.072 4.072 18 N -0.316 5.316 19 C -0.063 4.063 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.607 6.689 16.319 17.710 hybrid contribution -0.403 0.805 -1.834 2.043 sum -2.010 7.495 14.485 16.432 Atomic orbital electron populations 1.22070 0.97885 1.00071 0.99229 1.19084 0.92953 0.95774 0.93011 0.95621 1.21428 1.34818 1.08564 0.91468 0.95497 1.25884 0.95190 1.01900 0.95438 1.70145 1.51840 1.37732 0.99065 0.86072 0.78497 0.80744 0.79164 1.20468 1.21394 1.15088 1.21349 0.99282 0.98063 0.93543 1.21863 1.00187 0.95887 0.95588 0.91141 1.21647 0.99841 0.96064 0.98010 1.22231 1.01847 0.99474 0.95373 1.22056 0.98793 0.89085 0.97222 1.60736 1.12023 1.19820 1.39067 1.21990 1.01212 0.96326 0.86741 0.92672 0.95354 0.94072 0.92748 0.94102 0.93513 0.93169 0.92704 0.91763 0.90670 0.89155 0.91479 0.83688 0.91710 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.13 71.98 0.59 -5.07 16 2 C 0.01 0.48 1.73 -11.54 -0.02 0.46 16 3 H 0.03 1.17 4.98 -2.39 -0.01 1.16 16 4 C -0.52 -30.36 8.99 25.60 0.23 -30.13 16 5 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 6 C 0.01 0.76 5.33 84.65 0.45 1.21 16 7 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 8 Si 0.93 44.44 25.77 68.60 1.77 46.20 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.23 -9.82 5.54 99.48 0.55 -9.27 16 12 C -0.08 -3.24 4.07 30.59 0.12 -3.12 16 13 C -0.12 -3.41 2.22 -10.74 -0.02 -3.43 16 14 H 0.07 2.05 6.47 -2.38 -0.02 2.04 16 15 C -0.12 -3.34 5.01 30.67 0.15 -3.19 16 16 C -0.15 -3.20 6.08 30.65 0.19 -3.01 16 17 C 0.06 1.14 6.55 86.33 0.57 1.70 16 18 N -0.69 -15.01 6.87 -514.02 -3.53 -18.54 16 19 C 0.07 1.72 5.84 86.33 0.50 2.22 16 20 H 0.05 1.92 6.73 -2.39 -0.02 1.90 16 21 H 0.03 1.23 5.08 -2.39 -0.01 1.22 16 22 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 24 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.59 6.60 -2.39 -0.02 1.57 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.35 6.67 8.86 -89.69 -0.79 5.88 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -64.42 256.73 1.40 -63.01 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.11 Total: 11.65 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 2.76 Total: -42.35 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.23 Total: -78.51 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.77 Total: 46.20 kcal Total: -64.42 1.40 -63.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167465693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.396 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds