Wall clock time and date at job start Mon Mar 30 2020 01:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47436 * 2 1 4 4 C 1.50695 * 109.47065 * 239.99523 * 2 1 3 5 5 H 1.07996 * 120.00529 * 239.99900 * 4 2 1 6 6 C 1.37876 * 119.99765 * 60.00785 * 4 2 1 7 7 N 1.31518 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99799 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47189 * 59.99807 * 8 6 4 10 10 H 1.48504 * 109.46808 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47016 * 299.99272 * 8 6 4 12 12 C 1.53008 * 109.47069 * 119.99814 * 2 1 3 13 13 C 1.53000 * 109.47050 * 295.00308 * 12 2 1 14 14 H 1.09001 * 109.54009 * 55.08970 * 13 12 2 15 15 C 1.53117 * 109.50241 * 175.19711 * 13 12 2 16 16 C 1.53127 * 109.15989 * 177.59130 * 15 13 12 17 17 C 1.53038 * 109.27941 * 302.34585 * 16 15 13 18 18 N 1.46830 * 109.51757 * 59.17550 * 17 16 15 19 19 C 1.46847 * 111.21086 * 298.25173 * 18 17 16 20 20 H 1.09000 * 109.47060 * 300.00471 * 1 2 3 21 21 H 1.08997 * 109.47197 * 59.99738 * 1 2 3 22 22 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 23 23 H 0.96994 * 120.00264 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47173 * 175.00077 * 12 2 1 25 25 H 1.08994 * 109.46768 * 55.00006 * 12 2 1 26 26 H 1.08997 * 109.52073 * 297.49809 * 15 13 12 27 27 H 1.09004 * 109.52347 * 57.69155 * 15 13 12 28 28 H 1.08997 * 109.50037 * 62.28538 * 16 15 13 29 29 H 1.09000 * 109.49970 * 182.40199 * 16 15 13 30 30 H 1.08995 * 109.46433 * 179.19502 * 17 16 15 31 31 H 1.09004 * 109.46006 * 299.16206 * 17 16 15 32 32 H 1.00904 * 110.98205 * 174.15538 * 18 17 16 33 33 H 1.09002 * 109.46448 * 301.73578 * 19 18 17 34 34 H 1.08994 * 109.45958 * 181.75943 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 6 1.6351 0.0689 2.4954 14 1 0.5560 0.2229 2.4948 15 6 2.0396 -0.7112 3.7492 16 6 1.6856 0.1131 4.9901 17 6 2.3935 1.4679 4.9157 18 7 1.9727 2.1751 3.6996 19 6 2.3446 1.4250 2.4932 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7083 1.1609 -3.4844 24 1 3.1262 -0.7995 1.2057 25 1 1.6053 -1.7197 1.2952 26 1 1.5034 -1.6598 3.7768 27 1 3.1132 -0.8990 3.7309 28 1 0.6073 0.2677 5.0288 29 1 2.0099 -0.4184 5.8848 30 1 2.1322 2.0628 5.7907 31 1 3.4722 1.3130 4.8909 32 1 2.3522 3.1098 3.6757 33 1 3.4235 1.2704 2.4798 34 1 2.0476 1.9889 1.6091 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167465909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:56 Heat of formation + Delta-G solvation = -30.079859 kcal Electronic energy + Delta-G solvation = -13025.616380 eV Core-core repulsion = 10956.962624 eV Total energy + Delta-G solvation = -2068.653756 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.53169 -34.97494 -32.34686 -31.39093 -29.40134 -25.33042 -24.89429 -23.38267 -21.78720 -19.56165 -18.57745 -16.45224 -15.78189 -14.68665 -14.43131 -14.13890 -13.52948 -13.23716 -12.61979 -12.57911 -12.37328 -11.91719 -11.29390 -10.99179 -10.85072 -10.83843 -10.63674 -10.24257 -10.09351 -9.97412 -9.89082 -9.40880 -8.91578 -8.62166 -8.22228 -8.17135 -5.90315 -3.96546 3.35383 3.39937 3.42562 4.47908 4.51109 5.11339 5.18367 5.29610 5.39672 5.55012 5.69706 5.83190 5.91463 6.04399 6.16431 6.24217 6.31666 6.47751 6.55446 6.63163 6.80882 6.96661 7.08135 7.16324 7.33205 7.38303 7.55648 7.64907 7.82134 8.10812 8.28118 8.56605 9.07876 9.67714 11.15222 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066197 B = 0.008041 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.880351 B = 3481.506238 C = 3584.818359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.027 0.973 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.101 4.101 13 C -0.085 4.085 14 H 0.077 0.923 15 C -0.117 4.117 16 C -0.117 4.117 17 C 0.059 3.941 18 N -0.692 5.692 19 C 0.064 3.936 20 H 0.011 0.989 21 H 0.078 0.922 22 H 0.021 0.979 23 H 0.259 0.741 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.337 0.663 33 H 0.024 0.976 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 0.453 11.667 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.045 0.955 4 C -0.551 4.551 5 H 0.070 0.930 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.139 4.139 13 C -0.104 4.104 14 H 0.095 0.905 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.071 4.071 18 N -0.323 5.323 19 C -0.065 4.065 20 H 0.030 0.970 21 H 0.096 0.904 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.154 0.846 33 H 0.042 0.958 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.422 0.315 11.541 11.633 hybrid contribution 1.314 -0.343 -0.943 1.654 sum 2.737 -0.028 10.598 10.946 Atomic orbital electron populations 1.21825 0.99015 0.98630 0.99956 1.18678 0.92509 0.95709 0.90685 0.95523 1.21229 1.30781 1.12177 0.90923 0.93013 1.24965 0.95216 0.95034 0.98847 1.69886 1.36932 1.23037 1.23176 0.86733 0.79143 0.79839 0.82688 1.20391 1.21357 1.20412 1.21691 0.99400 0.98345 0.94507 1.21281 1.00943 0.93700 0.94436 0.90465 1.21678 1.00560 0.98415 0.94849 1.21584 1.01129 0.95026 0.97721 1.21877 0.96626 0.95609 0.92961 1.60301 1.64454 1.05302 1.02226 1.22070 0.96769 0.95572 0.92095 0.97024 0.90351 0.96002 0.93125 0.93812 0.93396 0.92224 0.92834 0.91408 0.92392 0.91588 0.95817 0.84626 0.95811 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.73 37.16 0.32 -3.07 16 2 C 0.04 1.07 2.17 -91.77 -0.20 0.87 16 3 H 0.03 0.72 6.37 -51.93 -0.33 0.39 16 4 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 5 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C -0.10 -2.13 4.09 -26.73 -0.11 -2.24 16 13 C -0.08 -1.53 2.21 -90.54 -0.20 -1.73 16 14 H 0.08 1.50 6.35 -51.93 -0.33 1.17 16 15 C -0.12 -1.78 5.29 -26.61 -0.14 -1.92 16 16 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 17 C 0.06 0.76 6.55 -3.84 -0.03 0.74 16 18 N -0.69 -10.28 6.84 -113.83 -0.78 -11.06 16 19 C 0.06 1.10 5.57 -3.83 -0.02 1.08 16 20 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 21 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.34 4.33 8.90 -39.29 -0.35 3.98 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 1.64 6.51 -51.93 -0.34 1.31 16 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -28.76 261.72 -7.92 -36.68 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.77 Total: 0.23 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.92 Total: -21.05 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.15 Total: -36.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.76 -7.92 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167465909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.601 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds