Wall clock time and date at job start Mon Mar 30 2020 02:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47520 * 2 1 4 4 C 1.39784 * 110.99793 * 67.66598 * 3 2 1 5 5 C 1.54428 * 111.76737 * 189.13023 * 4 3 2 6 6 C 1.50759 * 109.02472 * 282.58734 * 5 4 3 7 7 C 1.54173 * 112.60770 * 93.02162 * 6 5 4 8 8 C 1.53822 * 111.96927 * 318.49072 * 7 6 5 9 9 C 1.47626 * 111.00175 * 196.55727 * 3 2 1 10 10 H 1.08997 * 109.74775 * 269.98368 * 9 3 2 11 11 C 1.50697 * 109.74419 * 30.71080 * 9 3 2 12 12 H 1.07995 * 120.00445 * 58.92442 * 11 9 3 13 13 C 1.37885 * 120.00096 * 238.92085 * 11 9 3 14 14 N 1.31511 * 120.00042 * 176.10701 * 13 11 9 15 15 Si 1.86803 * 119.99725 * 356.10922 * 13 11 9 16 16 H 1.48503 * 109.46909 * 94.13108 * 15 13 11 17 17 H 1.48495 * 109.47128 * 214.13469 * 15 13 11 18 18 H 1.48505 * 109.46997 * 334.13388 * 15 13 11 19 19 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.46844 * 299.99778 * 1 2 3 21 21 H 1.08999 * 109.47043 * 59.99893 * 1 2 3 22 22 H 1.08998 * 109.47318 * 239.99806 * 2 1 3 23 23 H 1.08999 * 109.47043 * 120.00107 * 2 1 3 24 24 H 1.08999 * 109.02274 * 309.71783 * 4 3 2 25 25 H 1.08997 * 109.02191 * 68.61898 * 4 3 2 26 26 H 1.08998 * 109.55231 * 42.45244 * 5 4 3 27 27 H 1.09002 * 109.54532 * 162.63612 * 5 4 3 28 28 H 1.08998 * 108.85689 * 213.82336 * 6 5 4 29 29 H 1.08993 * 108.85934 * 332.31720 * 6 5 4 30 30 H 1.09003 * 108.98358 * 79.12588 * 7 6 5 31 31 H 1.09000 * 108.98276 * 197.84829 * 7 6 5 32 32 H 1.08995 * 109.05527 * 79.59242 * 8 7 6 33 33 H 1.09005 * 109.04909 * 198.56259 * 8 7 6 34 34 H 0.96997 * 119.99956 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7192 2.0225 1.2071 5 6 2.0202 3.5359 1.1458 6 6 3.5067 3.7473 1.2813 7 6 4.2218 3.8194 -0.0826 8 6 3.6854 2.7688 -1.0699 9 6 3.4416 1.4433 -0.3927 10 1 4.0720 1.3607 0.4926 11 6 3.7527 0.3193 -1.3471 12 1 3.2158 0.2393 -2.2807 13 6 4.7230 -0.6071 -1.0283 14 7 4.9416 -1.6308 -1.8244 15 14 5.7270 -0.4080 0.5343 16 1 5.0977 -1.1885 1.6298 17 1 7.1073 -0.9042 0.3025 18 1 5.7741 1.0272 0.9129 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.6621 1.8793 1.4310 25 1 2.3145 1.5750 2.0030 26 1 1.6804 3.9371 0.1910 27 1 1.5026 4.0439 1.9596 28 1 3.6825 4.6780 1.8208 29 1 3.9289 2.9227 1.8556 30 1 4.0756 4.8124 -0.5076 31 1 5.2886 3.6530 0.0672 32 1 2.7491 3.1275 -1.4972 33 1 4.4116 2.6298 -1.8708 34 1 5.6239 -2.2827 -1.6000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212265879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:43 Heat of formation + Delta-G solvation = -23.433201 kcal Electronic energy + Delta-G solvation = -13688.238810 eV Core-core repulsion = 11619.873274 eV Total energy + Delta-G solvation = -2068.365536 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39318 -35.83088 -35.02617 -32.87407 -31.23937 -28.15006 -26.61499 -24.45751 -23.04628 -20.99788 -20.05055 -19.16947 -17.16614 -16.16643 -15.94168 -15.67508 -15.45740 -14.90730 -14.65787 -14.19373 -13.62039 -13.22877 -13.07791 -12.94533 -12.73017 -12.50645 -12.16056 -11.98997 -11.89394 -11.42585 -11.23954 -11.19612 -10.99110 -10.81900 -10.65806 -8.75928 -8.32524 -6.31423 1.23894 1.27751 1.36982 2.27490 2.94827 3.47034 4.02481 4.07935 4.15400 4.37446 4.45912 4.47638 4.62704 4.69406 4.73885 4.84205 4.93349 5.00561 5.05652 5.11078 5.15961 5.23073 5.36488 5.43741 5.46712 5.55736 5.63478 5.67649 5.77280 6.26940 6.50028 6.74248 7.10095 7.32037 8.83876 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.017880 C = 0.013453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.214073 B = 1565.596843 C = 2080.837011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 N -0.557 5.557 4 C 0.068 3.932 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.101 4.101 9 C 0.184 3.816 10 H 0.012 0.988 11 C -0.495 4.495 12 H 0.038 0.962 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.924 3.076 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.245 1.245 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.068 0.932 23 H -0.002 1.002 24 H 0.079 0.921 25 H -0.011 1.011 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 9.398 7.759 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 N -0.282 5.282 4 C -0.062 4.062 5 C -0.146 4.146 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.139 4.139 9 C 0.079 3.921 10 H 0.030 0.970 11 C -0.533 4.533 12 H 0.056 0.944 13 C -0.177 4.177 14 N -0.582 5.582 15 Si 0.750 3.250 16 H -0.204 1.204 17 H -0.208 1.208 18 H -0.169 1.169 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.016 0.984 24 H 0.097 0.903 25 H 0.007 0.993 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.147 9.506 7.415 13.109 hybrid contribution 1.235 -1.090 0.868 1.863 sum -3.912 8.416 8.284 12.440 Atomic orbital electron populations 1.21761 0.93981 1.01436 1.01966 1.21907 0.95481 0.89497 0.99805 1.59147 1.19953 1.15936 1.33123 1.21124 1.00298 0.95384 0.89397 1.21442 0.95670 0.94501 1.02974 1.21413 0.96078 1.01287 0.96812 1.21951 0.98799 0.99058 0.95577 1.21438 1.00067 0.94614 0.97786 1.19466 0.84830 0.94028 0.93815 0.97042 1.21055 1.18835 1.09309 1.04144 0.94391 1.25750 0.98191 0.94436 0.99347 1.70024 1.34579 1.13656 1.39893 0.86063 0.78728 0.79620 0.80617 1.20408 1.20793 1.16935 0.92099 0.91957 0.92505 0.91341 0.98406 0.90287 0.99284 0.91070 0.89380 0.90151 0.94886 0.90623 0.93698 0.92147 0.94004 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.85 71.98 0.71 -3.71 16 2 C 0.06 2.61 5.27 86.30 0.46 3.07 16 3 N -0.56 -23.38 3.91 -892.30 -3.49 -26.87 16 4 C 0.07 2.35 4.81 88.07 0.42 2.77 16 5 C -0.11 -3.10 5.65 30.35 0.17 -2.93 16 6 C -0.12 -3.55 5.32 30.26 0.16 -3.39 16 7 C -0.12 -3.85 5.91 31.27 0.18 -3.67 16 8 C -0.10 -4.16 4.97 30.16 0.15 -4.01 16 9 C 0.18 8.65 1.81 43.32 0.08 8.73 16 10 H 0.01 0.58 2.97 -2.39 -0.01 0.57 16 11 C -0.49 -27.87 6.07 25.60 0.16 -27.71 16 12 H 0.04 2.40 7.91 -2.91 -0.02 2.38 16 13 C 0.02 1.22 5.47 84.66 0.46 1.68 16 14 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 15 Si 0.92 44.78 27.36 68.60 1.88 46.66 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.25 -11.20 6.23 99.48 0.62 -10.58 16 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 20 H 0.06 1.78 6.40 -2.38 -0.02 1.77 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.07 3.53 5.74 -2.39 -0.01 3.51 16 23 H 0.00 -0.10 8.09 -2.39 -0.02 -0.12 16 24 H 0.08 2.41 5.97 -2.39 -0.01 2.39 16 25 H -0.01 -0.40 7.54 -2.39 -0.02 -0.42 16 26 H 0.07 2.09 7.11 -2.39 -0.02 2.08 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.12 6.57 -2.39 -0.02 1.10 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 2.43 7.26 -2.39 -0.02 2.41 16 33 H 0.04 1.85 7.71 -2.38 -0.02 1.84 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -62.47 251.23 2.61 -59.86 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.97 Total: 7.36 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 2.95 Total: -29.16 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.19 Total: -84.71 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -62.47 2.61 -59.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212265879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.427 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds