Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.50710 * 109.46939 * 119.99759 * 2 1 3 5 5 H 1.08000 * 119.99987 * 119.99583 * 4 2 1 6 6 C 1.37871 * 119.99862 * 300.00112 * 4 2 1 7 7 N 1.31521 * 119.99955 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00079 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46968 * 90.00516 * 8 6 4 10 10 H 1.48500 * 109.47093 * 210.00076 * 8 6 4 11 11 H 1.48501 * 109.47362 * 330.00156 * 8 6 4 12 12 N 1.46894 * 109.47068 * 239.99366 * 2 1 3 13 13 C 1.46900 * 110.99696 * 85.00320 * 12 2 1 14 14 C 1.53005 * 109.47159 * 179.97438 * 13 12 2 15 15 H 1.09002 * 115.55067 * 29.41672 * 14 13 12 16 16 C 1.52999 * 117.51737 * 243.71706 * 14 13 12 17 17 C 1.53005 * 117.49765 * 175.08685 * 14 13 12 18 18 C 1.53002 * 117.49665 * 215.00110 * 17 14 13 19 19 C 1.52996 * 117.49883 * 0.02562 * 17 14 13 20 20 H 1.09000 * 109.47019 * 300.00189 * 1 2 3 21 21 H 1.09003 * 109.47050 * 60.00396 * 1 2 3 22 22 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 23 23 H 0.96995 * 119.99540 * 179.97438 * 7 6 4 24 24 H 1.00903 * 111.00081 * 208.95529 * 12 2 1 25 25 H 1.08998 * 109.47488 * 59.99990 * 13 12 2 26 26 H 1.09001 * 109.47433 * 299.99508 * 13 12 2 27 27 H 1.09003 * 117.50034 * 0.02562 * 16 14 13 28 28 H 1.08995 * 117.49797 * 145.02727 * 16 14 13 29 29 H 1.08998 * 109.47083 * 60.00137 * 18 17 14 30 30 H 1.08994 * 109.46707 * 180.02562 * 18 17 14 31 31 H 1.09006 * 109.47074 * 300.00035 * 18 17 14 32 32 H 1.09001 * 109.47160 * 60.00031 * 19 17 14 33 33 H 1.08999 * 109.46762 * 179.97438 * 19 17 14 34 34 H 1.08998 * 109.47049 * 299.99592 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5567 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8746 2.6993 10 1 0.9771 1.9955 3.9069 11 1 0.8491 2.1774 1.4922 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5962 -0.5331 -3.5741 15 1 2.3634 -1.5976 -3.6024 16 6 3.9320 -0.0861 -4.1713 17 6 2.6251 0.2194 -4.9060 18 6 2.3249 -0.5799 -6.1756 19 6 2.1386 1.6699 -4.9085 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9039 -0.5273 4.4376 24 1 2.9173 -1.1206 -1.0286 25 1 2.7589 1.0460 -2.1182 26 1 1.0871 0.6161 -2.5526 27 1 4.4454 0.7462 -3.6897 28 1 4.5779 -0.8565 -4.5925 29 1 1.3245 -1.0072 -6.1078 30 1 2.3809 0.0794 -7.0417 31 1 3.0560 -1.3815 -6.2817 32 1 2.7543 2.2609 -4.2304 33 1 2.2155 2.0771 -5.9167 34 1 1.0998 1.7053 -4.5802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226259276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = 13.920828 kcal Electronic energy + Delta-G solvation = -12660.835801 eV Core-core repulsion = 10594.090058 eV Total energy + Delta-G solvation = -2066.745743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.66373 -35.73564 -32.39724 -30.25649 -28.57416 -27.57535 -25.43717 -24.27280 -20.74918 -19.85572 -18.52128 -16.73427 -15.55176 -14.98392 -14.24169 -14.00789 -13.66761 -13.28836 -12.93651 -12.69254 -12.40479 -12.15038 -11.96107 -11.88595 -11.48318 -11.17972 -10.93298 -10.66491 -10.54088 -10.10510 -9.60088 -9.59114 -9.29228 -8.96567 -8.59654 -7.45465 -6.08902 -4.08513 3.27650 3.36755 3.39472 3.84444 4.39465 4.67980 4.86029 4.98927 5.11448 5.24039 5.45192 5.63075 5.64312 5.74415 5.89602 5.94355 5.96511 5.98738 6.08750 6.15339 6.24286 6.36751 6.44827 6.53560 6.60567 6.75782 6.84517 7.41543 7.60192 7.98212 8.39572 8.64473 8.96145 9.53587 11.04171 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060729 B = 0.007626 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.950937 B = 3670.870077 C = 3860.413024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.181 3.819 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.079 0.921 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.678 5.678 13 C 0.090 3.910 14 C -0.133 4.133 15 H 0.110 0.890 16 C -0.177 4.177 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.114 4.114 20 H 0.036 0.964 21 H 0.025 0.975 22 H 0.058 0.942 23 H 0.264 0.736 24 H 0.340 0.660 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 3.755 -15.607 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.040 4.040 14 C -0.151 4.151 15 H 0.128 0.872 16 C -0.214 4.214 17 C -0.134 4.134 18 C -0.169 4.169 19 C -0.171 4.171 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.158 0.842 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.491 3.508 -15.566 15.964 hybrid contribution 0.180 1.293 0.525 1.408 sum -0.311 4.802 -15.040 15.791 Atomic orbital electron populations 1.22066 0.98754 1.01011 0.97632 1.19521 0.91747 0.92928 0.88571 0.98317 1.21123 1.32245 1.13736 0.88631 0.90344 1.24938 0.95717 0.96734 0.95752 1.69896 1.45612 1.40304 0.97910 0.86795 0.80701 0.83587 0.76716 1.20482 1.22528 1.19425 1.60491 1.32920 1.32548 1.04982 1.21483 0.99315 0.93358 0.89857 1.22559 0.99512 1.00074 0.92971 0.87210 1.23311 0.90599 1.03234 1.04236 1.21565 1.01776 0.96477 0.93609 1.21320 1.01506 0.98974 0.95073 1.21311 1.01241 0.93164 1.01360 0.94551 0.95609 0.92330 0.92595 0.84232 0.96140 0.91603 0.89146 0.89218 0.92290 0.92545 0.92661 0.92513 0.92619 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.90 37.16 0.33 -2.82 16 2 C 0.18 4.42 2.19 -68.86 -0.15 4.27 16 3 H 0.00 -0.02 6.86 -51.93 -0.36 -0.37 16 4 C -0.52 -14.80 9.17 -34.44 -0.32 -15.12 16 5 H 0.08 2.40 7.86 -52.49 -0.41 1.99 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 8 Si 0.89 22.40 24.37 -169.99 -4.14 18.26 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.53 6.53 56.52 0.37 -6.17 16 12 N -0.68 -14.30 6.30 -107.95 -0.68 -14.98 16 13 C 0.09 1.57 4.84 -3.82 -0.02 1.55 16 14 C -0.13 -1.94 5.67 -90.61 -0.51 -2.46 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C -0.18 -2.27 9.47 -26.73 -0.25 -2.52 16 17 C -0.13 -1.64 2.70 -154.50 -0.42 -2.06 16 18 C -0.11 -1.16 9.85 37.16 0.37 -0.79 16 19 C -0.11 -1.31 8.86 37.16 0.33 -0.98 16 20 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 21 H 0.02 0.52 7.45 -51.93 -0.39 0.13 16 22 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.34 7.18 8.22 -39.29 -0.32 6.86 16 25 H 0.02 0.37 7.79 -51.93 -0.40 -0.04 16 26 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 27 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 28 H 0.09 1.04 8.05 -51.93 -0.42 0.63 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 33 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 34 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -29.69 268.96 -6.49 -36.18 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.75 Total: 2.38 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.74 Total: -18.96 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.09 Total: -41.92 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.69 -6.49 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226259276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.102 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds