Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.50710 * 109.46939 * 119.99759 * 2 1 3 5 5 H 1.08000 * 119.99987 * 119.99583 * 4 2 1 6 6 C 1.37871 * 119.99862 * 300.00112 * 4 2 1 7 7 N 1.31521 * 119.99955 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00079 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46968 * 90.00516 * 8 6 4 10 10 H 1.48500 * 109.47093 * 210.00076 * 8 6 4 11 11 H 1.48501 * 109.47362 * 330.00156 * 8 6 4 12 12 N 1.46894 * 109.47068 * 239.99366 * 2 1 3 13 13 C 1.46900 * 110.99696 * 85.00320 * 12 2 1 14 14 C 1.53005 * 109.47159 * 179.97438 * 13 12 2 15 15 H 1.09002 * 115.55067 * 29.41672 * 14 13 12 16 16 C 1.52999 * 117.51737 * 243.71706 * 14 13 12 17 17 C 1.53005 * 117.49765 * 175.08685 * 14 13 12 18 18 C 1.53002 * 117.49665 * 215.00110 * 17 14 13 19 19 C 1.52996 * 117.49883 * 0.02562 * 17 14 13 20 20 H 1.09000 * 109.47019 * 300.00189 * 1 2 3 21 21 H 1.09003 * 109.47050 * 60.00396 * 1 2 3 22 22 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 23 23 H 0.96995 * 119.99540 * 179.97438 * 7 6 4 24 24 H 1.00903 * 111.00081 * 208.95529 * 12 2 1 25 25 H 1.08998 * 109.47488 * 59.99990 * 13 12 2 26 26 H 1.09001 * 109.47433 * 299.99508 * 13 12 2 27 27 H 1.09003 * 117.50034 * 0.02562 * 16 14 13 28 28 H 1.08995 * 117.49797 * 145.02727 * 16 14 13 29 29 H 1.08998 * 109.47083 * 60.00137 * 18 17 14 30 30 H 1.08994 * 109.46707 * 180.02562 * 18 17 14 31 31 H 1.09006 * 109.47074 * 300.00035 * 18 17 14 32 32 H 1.09001 * 109.47160 * 60.00031 * 19 17 14 33 33 H 1.08999 * 109.46762 * 179.97438 * 19 17 14 34 34 H 1.08998 * 109.47049 * 299.99592 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5567 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8746 2.6993 10 1 0.9771 1.9955 3.9069 11 1 0.8491 2.1774 1.4922 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5962 -0.5331 -3.5741 15 1 2.3634 -1.5976 -3.6024 16 6 3.9320 -0.0861 -4.1713 17 6 2.6251 0.2194 -4.9060 18 6 2.3249 -0.5799 -6.1756 19 6 2.1386 1.6699 -4.9085 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9039 -0.5273 4.4376 24 1 2.9173 -1.1206 -1.0286 25 1 2.7589 1.0460 -2.1182 26 1 1.0871 0.6161 -2.5526 27 1 4.4454 0.7462 -3.6897 28 1 4.5779 -0.8565 -4.5925 29 1 1.3245 -1.0072 -6.1078 30 1 2.3809 0.0794 -7.0417 31 1 3.0560 -1.3815 -6.2817 32 1 2.7543 2.2609 -4.2304 33 1 2.2155 2.0771 -5.9167 34 1 1.0998 1.7053 -4.5802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226259276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -5.868032 kcal Electronic energy + Delta-G solvation = -12661.693910 eV Core-core repulsion = 10594.090058 eV Total energy + Delta-G solvation = -2067.603853 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78243 -37.48807 -34.46543 -31.89203 -29.77108 -28.47588 -27.32709 -25.92081 -21.98988 -21.69306 -19.64500 -18.78031 -17.32254 -16.36311 -15.79389 -15.42569 -14.94258 -14.75128 -14.57442 -14.15159 -13.96503 -13.41521 -13.30611 -12.94453 -12.78480 -12.73556 -12.59304 -12.15732 -12.10527 -11.81864 -11.46403 -11.13427 -10.80501 -10.68193 -10.35616 -9.17049 -8.33692 -6.38651 1.29132 1.33366 1.44320 2.28924 2.79288 3.01298 3.39239 3.85728 3.91365 4.05917 4.24093 4.46741 4.48826 4.61532 4.70832 4.79708 4.84337 4.85654 4.90278 4.96056 4.98801 5.07832 5.09358 5.13854 5.30723 5.35618 5.47680 5.52090 5.60709 5.98544 6.49167 6.63195 6.80847 7.28189 8.82860 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060729 B = 0.007626 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.950937 B = 3670.870077 C = 3860.413024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.185 3.815 3 H -0.006 1.006 4 C -0.527 4.527 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.945 5.945 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.252 1.252 12 N -0.681 5.681 13 C 0.095 3.905 14 C -0.153 4.153 15 H 0.103 0.897 16 C -0.173 4.173 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.116 4.116 20 H 0.032 0.968 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.267 0.733 24 H 0.335 0.665 25 H 0.017 0.983 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 5.190 -17.595 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 H 0.011 0.989 4 C -0.565 4.565 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.585 5.585 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.223 1.223 11 H -0.177 1.177 12 N -0.312 5.312 13 C -0.034 4.034 14 C -0.171 4.171 15 H 0.121 0.879 16 C -0.210 4.210 17 C -0.119 4.119 18 C -0.168 4.168 19 C -0.173 4.173 20 H 0.051 0.949 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.370 4.941 -17.585 18.317 hybrid contribution 0.533 0.773 1.102 1.448 sum -0.837 5.714 -16.483 17.465 Atomic orbital electron populations 1.21979 0.97219 1.01041 0.98882 1.19386 0.92909 0.92073 0.88124 0.98862 1.21408 1.31588 1.12756 0.90776 0.94196 1.25812 0.97204 1.00079 0.95274 1.70038 1.47449 1.42432 0.98627 0.85779 0.79244 0.79732 0.77205 1.19008 1.22285 1.17662 1.60482 1.32744 1.33173 1.04807 1.21481 0.99524 0.92896 0.89505 1.22383 1.01717 0.99681 0.93355 0.87928 1.23374 0.90460 1.03333 1.03855 1.21730 1.00487 0.96770 0.92916 1.21357 1.01683 0.99255 0.94552 1.21364 1.00862 0.92567 1.02556 0.94931 0.92593 0.92996 0.92352 0.84734 0.96527 0.91424 0.89437 0.87944 0.92228 0.90781 0.92164 0.93123 0.90525 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.90 71.98 0.64 -5.24 16 2 C 0.18 8.90 2.19 44.17 0.10 8.99 16 3 H -0.01 -0.30 6.86 -2.39 -0.02 -0.32 16 4 C -0.53 -30.65 9.17 25.60 0.23 -30.41 16 5 H 0.04 2.56 7.86 -2.91 -0.02 2.53 16 6 C 0.01 0.83 5.45 84.65 0.46 1.30 16 7 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 8 Si 0.95 45.57 24.37 68.60 1.67 47.25 16 9 H -0.26 -12.00 6.87 99.48 0.68 -11.31 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 11 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 12 N -0.68 -28.57 6.30 -495.44 -3.12 -31.69 16 13 C 0.10 3.22 4.84 86.30 0.42 3.64 16 14 C -0.15 -4.27 5.67 -10.79 -0.06 -4.33 16 15 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 16 C -0.17 -4.12 9.47 30.60 0.29 -3.83 16 17 C -0.12 -2.62 2.70 -52.18 -0.14 -2.76 16 18 C -0.11 -1.98 9.85 71.98 0.71 -1.27 16 19 C -0.12 -2.37 8.86 71.98 0.64 -1.73 16 20 H 0.03 1.44 3.27 -2.39 -0.01 1.44 16 21 H 0.06 2.10 7.45 -2.39 -0.02 2.08 16 22 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.34 14.45 8.22 -89.69 -0.74 13.71 16 25 H 0.02 0.58 7.79 -2.39 -0.02 0.56 16 26 H 0.07 2.25 7.07 -2.39 -0.02 2.23 16 27 H 0.09 2.13 7.94 -2.39 -0.02 2.12 16 28 H 0.10 2.16 8.05 -2.39 -0.02 2.14 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 31 H 0.06 1.01 7.90 -2.38 -0.02 1.00 16 32 H 0.05 1.08 7.90 -2.39 -0.02 1.07 16 33 H 0.08 1.24 7.92 -2.39 -0.02 1.22 16 34 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 Total: -1.00 -63.57 268.96 2.37 -61.20 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.24 Total: 18.14 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.29 Total: -35.64 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -2.82 Total: -90.94 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.25 kcal Total: -63.57 2.37 -61.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226259276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.329 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds