Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46929 * 2 1 4 4 C 1.50705 * 109.46974 * 119.99761 * 2 1 3 5 5 H 1.08002 * 119.99504 * 116.64281 * 4 2 1 6 6 C 1.37880 * 120.00074 * 296.64077 * 4 2 1 7 7 N 1.31511 * 119.99776 * 352.68046 * 6 4 2 8 8 Si 1.86800 * 119.99743 * 172.67584 * 6 4 2 9 9 H 1.48501 * 109.47003 * 265.06788 * 8 6 4 10 10 H 1.48497 * 109.47007 * 25.07176 * 8 6 4 11 11 H 1.48502 * 109.46993 * 145.06840 * 8 6 4 12 12 N 1.46898 * 109.47282 * 240.00008 * 2 1 3 13 13 C 1.46902 * 111.00139 * 85.00016 * 12 2 1 14 14 C 1.52992 * 109.47015 * 180.02562 * 13 12 2 15 15 H 1.09001 * 115.55336 * 330.57856 * 14 13 12 16 16 C 1.52997 * 117.50337 * 116.25471 * 14 13 12 17 17 C 1.53005 * 117.49863 * 184.91596 * 14 13 12 18 18 C 1.53002 * 117.49616 * 359.97438 * 17 14 13 19 19 C 1.52991 * 117.50136 * 145.01813 * 17 14 13 20 20 H 1.08996 * 109.47220 * 57.28650 * 1 2 3 21 21 H 1.09004 * 109.46945 * 177.28008 * 1 2 3 22 22 H 1.09005 * 109.47158 * 297.28089 * 1 2 3 23 23 H 0.96999 * 119.99505 * 179.97438 * 7 6 4 24 24 H 1.00898 * 110.99934 * 208.95392 * 12 2 1 25 25 H 1.09003 * 109.46749 * 300.00131 * 13 12 2 26 26 H 1.08995 * 109.47189 * 59.99804 * 13 12 2 27 27 H 1.09000 * 117.49928 * 214.98137 * 16 14 13 28 28 H 1.08999 * 117.49599 * 359.96742 * 16 14 13 29 29 H 1.09006 * 109.46552 * 60.00913 * 18 17 14 30 30 H 1.08999 * 109.47005 * 180.02562 * 18 17 14 31 31 H 1.08998 * 109.47237 * 300.00671 * 18 17 14 32 32 H 1.09001 * 109.47564 * 59.99892 * 19 17 14 33 33 H 1.09008 * 109.47229 * 179.97438 * 19 17 14 34 34 H 1.08994 * 109.47535 * 299.99746 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6077 -1.6191 1.1323 6 6 1.7573 -0.2002 2.4816 7 7 1.1836 0.9772 2.6000 8 14 2.1996 -1.1817 4.0083 9 1 1.0177 -1.9623 4.4544 10 1 3.3158 -2.1093 3.6942 11 1 2.6167 -0.2534 5.0898 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5744 15 1 3.2690 -1.3645 -3.3671 16 6 1.6447 -0.6743 -4.7650 17 6 2.8422 0.2754 -4.8496 18 6 2.5572 1.7778 -4.7997 19 6 4.0158 -0.1450 -5.7364 20 1 -0.3633 0.5554 -0.8646 21 1 -0.3633 -1.0266 -0.0488 22 1 -0.3634 0.4711 0.9134 23 1 0.9898 1.3359 3.4802 24 1 2.9173 -1.1205 -1.0287 25 1 1.0871 0.6163 -2.5525 26 1 2.7588 1.0462 -2.1182 27 1 1.6935 -1.5983 -5.3412 28 1 0.6539 -0.2291 -4.6736 29 1 3.1847 2.2415 -4.0385 30 1 2.7758 2.2215 -5.7710 31 1 1.5078 1.9406 -4.5541 32 1 3.8691 -1.1721 -6.0706 33 1 4.0710 0.5142 -6.6028 34 1 4.9434 -0.0770 -5.1681 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226259297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = -12.648986 kcal Electronic energy + Delta-G solvation = -12596.274269 eV Core-core repulsion = 10528.376372 eV Total energy + Delta-G solvation = -2067.897897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73936 -37.32081 -34.40310 -31.31606 -29.61921 -28.46612 -27.37309 -25.83230 -22.06204 -21.70530 -19.62527 -18.41530 -16.88772 -16.21626 -15.95570 -15.48226 -14.98282 -14.66830 -14.28675 -13.83400 -13.50548 -13.30556 -13.13406 -12.87992 -12.73093 -12.67085 -12.41854 -12.29067 -12.17541 -12.02336 -11.71156 -10.96840 -10.74285 -10.53698 -10.34869 -9.04605 -8.17946 -6.29156 1.41326 1.43061 1.53507 2.40787 2.81075 3.13193 3.53833 3.83367 3.97277 4.09666 4.25906 4.49527 4.62465 4.76692 4.79311 4.85926 4.90154 4.97254 5.03037 5.07708 5.08630 5.10568 5.16743 5.29201 5.33637 5.43943 5.52038 5.65177 5.80765 6.14567 6.45043 6.77539 6.98986 7.40928 8.90928 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063181 B = 0.006921 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.067250 B = 4044.766170 C = 4164.642413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.213 3.787 3 H -0.030 1.030 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.266 1.266 11 H -0.283 1.283 12 N -0.685 5.685 13 C 0.099 3.901 14 C -0.151 4.151 15 H 0.102 0.898 16 C -0.161 4.161 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.110 4.110 20 H 0.022 0.978 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.054 0.946 26 H 0.010 0.990 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -1.288 -13.525 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 H -0.013 1.013 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.209 1.209 12 N -0.316 5.316 13 C -0.030 4.030 14 C -0.169 4.169 15 H 0.120 0.880 16 C -0.198 4.198 17 C -0.125 4.125 18 C -0.173 4.173 19 C -0.167 4.167 20 H 0.041 0.959 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.728 -1.398 -13.563 13.905 hybrid contribution 0.703 0.339 1.396 1.600 sum 3.431 -1.059 -12.167 12.685 Atomic orbital electron populations 1.21475 0.97829 0.98808 0.98534 1.18929 0.92605 0.90964 0.87099 1.01288 1.21584 1.34625 1.09945 0.91660 0.92179 1.25771 0.95087 0.95578 1.02175 1.70084 1.43745 1.17693 1.24432 0.85463 0.78644 0.78474 0.78562 1.20055 1.19030 1.20854 1.60639 1.32200 1.33418 1.05325 1.21379 0.98440 0.93026 0.90150 1.22336 1.03761 1.01942 0.88889 0.88007 1.23304 0.94408 1.01287 1.00831 1.21779 0.98423 0.93790 0.98516 1.21351 1.01033 0.92606 1.02325 1.21347 0.95367 1.01647 0.98364 0.95857 0.94676 0.93732 0.92767 0.85062 0.92739 0.97201 0.87717 0.89456 0.93187 0.90356 0.93136 0.91843 0.90779 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 9.24 71.98 0.67 -4.88 16 2 C 0.21 11.31 2.49 44.17 0.11 11.42 16 3 H -0.03 -1.81 7.79 -2.39 -0.02 -1.82 16 4 C -0.54 -30.51 8.53 25.60 0.22 -30.29 16 5 H 0.06 3.32 7.66 -2.91 -0.02 3.30 16 6 C 0.01 0.74 5.21 84.66 0.44 1.18 16 7 N -0.92 -54.40 11.91 21.45 0.26 -54.15 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.69 -30.60 6.30 -495.47 -3.12 -33.72 16 13 C 0.10 3.77 4.84 86.30 0.42 4.19 16 14 C -0.15 -4.53 5.67 -10.80 -0.06 -4.59 16 15 H 0.10 3.05 8.13 -2.39 -0.02 3.03 16 16 C -0.16 -4.10 9.47 30.62 0.29 -3.81 16 17 C -0.12 -3.00 2.70 -52.16 -0.14 -3.14 16 18 C -0.12 -2.71 8.86 71.98 0.64 -2.07 16 19 C -0.11 -2.09 9.85 71.98 0.71 -1.38 16 20 H 0.02 1.06 7.52 -2.39 -0.02 1.05 16 21 H 0.03 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.04 2.47 6.58 -2.38 -0.02 2.45 16 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.33 14.47 8.23 -89.70 -0.74 13.73 16 25 H 0.05 2.13 7.22 -2.39 -0.02 2.11 16 26 H 0.01 0.40 7.68 -2.39 -0.02 0.38 16 27 H 0.10 2.30 8.05 -2.39 -0.02 2.28 16 28 H 0.09 2.29 7.94 -2.39 -0.02 2.27 16 29 H 0.05 1.26 7.84 -2.38 -0.02 1.24 16 30 H 0.08 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.05 1.23 7.90 -2.39 -0.02 1.21 16 32 H 0.06 1.10 7.90 -2.39 -0.02 1.08 16 33 H 0.07 1.16 7.93 -2.38 -0.02 1.15 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -60.84 276.82 2.76 -58.08 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.31 Total: 17.06 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.29 Total: -33.37 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.87 Total: -87.87 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -60.84 2.76 -58.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226259297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.434 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds