Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 H 1.08998 * 115.54923 * 330.58472 * 14 13 12 16 16 C 1.52994 * 117.49696 * 116.25406 * 14 13 12 17 17 C 1.52998 * 117.49709 * 184.91237 * 14 13 12 18 18 C 1.52999 * 117.49838 * 0.02562 * 17 14 13 19 19 C 1.53000 * 117.49826 * 145.02050 * 17 14 13 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 25 25 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 26 26 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 27 27 H 1.09003 * 117.49808 * 214.97860 * 16 14 13 28 28 H 1.09002 * 117.50030 * 359.97355 * 16 14 13 29 29 H 1.09006 * 109.47351 * 60.00439 * 18 17 14 30 30 H 1.09003 * 109.46987 * 179.97438 * 18 17 14 31 31 H 1.08992 * 109.47412 * 299.99681 * 18 17 14 32 32 H 1.09005 * 109.46732 * 59.99864 * 19 17 14 33 33 H 1.08995 * 109.47444 * 179.97438 * 19 17 14 34 34 H 1.09004 * 109.47378 * 300.00214 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 1 2.3616 -1.5975 3.6027 16 6 3.9312 -0.0871 4.1716 17 6 2.6238 0.2194 4.9063 18 6 2.1371 1.6699 4.9086 19 6 2.3229 -0.5796 6.1759 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 2.9173 -1.1206 1.0287 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6164 2.5525 27 1 4.5765 -0.8579 4.5931 28 1 4.4453 0.7446 3.6897 29 1 1.0983 1.7052 4.5803 30 1 2.2130 2.0770 5.9170 31 1 2.7528 2.2609 4.2307 32 1 3.0537 -1.3814 6.2823 33 1 2.3788 0.0797 7.0420 34 1 1.3223 -1.0067 6.1079 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226259309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = -11.592323 kcal Electronic energy + Delta-G solvation = -12600.189027 eV Core-core repulsion = 10532.336951 eV Total energy + Delta-G solvation = -2067.852077 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75815 -37.32658 -34.41256 -31.28140 -29.55902 -28.45880 -27.41773 -25.87418 -22.01406 -21.65415 -19.64584 -18.44888 -16.91679 -16.46251 -15.77333 -15.33298 -14.93101 -14.63453 -14.43527 -13.89372 -13.52540 -13.34555 -12.95189 -12.88137 -12.77019 -12.64436 -12.45194 -12.22856 -12.19656 -12.00132 -11.71171 -10.95359 -10.69816 -10.57342 -10.35427 -9.07920 -8.14643 -6.29522 1.42089 1.43192 1.53599 2.40865 2.80159 3.13687 3.49015 3.86720 3.92095 4.11858 4.24592 4.48499 4.64398 4.73082 4.80295 4.86800 4.90504 4.97495 5.04926 5.07327 5.07791 5.12793 5.19784 5.29848 5.33286 5.47285 5.52143 5.66224 5.84178 6.20013 6.46613 6.76607 6.98827 7.41166 8.91357 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.065573 B = 0.006949 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.905620 B = 4028.571566 C = 4204.039785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.034 1.034 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.686 5.686 13 C 0.100 3.900 14 C -0.152 4.152 15 H 0.105 0.895 16 C -0.169 4.169 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.110 4.110 20 H 0.058 0.942 21 H 0.020 0.980 22 H 0.028 0.972 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.009 0.991 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -0.966 13.489 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.316 5.316 13 C -0.030 4.030 14 C -0.170 4.170 15 H 0.123 0.877 16 C -0.206 4.206 17 C -0.121 4.121 18 C -0.174 4.174 19 C -0.167 4.167 20 H 0.077 0.923 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.999 -1.086 13.523 13.894 hybrid contribution 0.852 0.373 -1.381 1.665 sum 3.851 -0.713 12.143 12.759 Atomic orbital electron populations 1.21540 0.97727 0.98876 0.98965 1.18933 0.92791 0.90692 0.87082 1.01609 1.21595 1.31832 1.12748 0.91615 0.92206 1.25781 0.95128 0.95666 1.02176 1.70032 1.37503 1.24066 1.24254 0.85433 0.78877 0.78169 0.78391 1.19998 1.20783 1.19137 1.60639 1.32148 1.33447 1.05411 1.21376 0.98724 0.92901 0.89992 1.22379 1.01813 0.99647 0.93187 0.87713 1.23373 0.90329 1.03298 1.03632 1.21739 1.00661 0.96633 0.93076 1.21355 1.00633 0.92863 1.02500 1.21350 1.01693 0.99271 0.94405 0.92347 0.96142 0.95268 0.92766 0.85051 0.97315 0.92621 0.87520 0.89647 0.92868 0.90322 0.93369 0.91879 0.90752 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 9.19 71.98 0.66 -5.22 16 2 C 0.21 11.41 2.60 44.17 0.11 11.52 16 3 H -0.03 -1.98 7.80 -2.39 -0.02 -2.00 16 4 C -0.54 -30.55 8.59 25.60 0.22 -30.33 16 5 H 0.06 3.30 7.62 -2.91 -0.02 3.28 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 8 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 N -0.69 -30.80 6.30 -495.41 -3.12 -33.92 16 13 C 0.10 3.79 4.84 86.30 0.42 4.20 16 14 C -0.15 -4.57 5.67 -10.80 -0.06 -4.63 16 15 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 16 C -0.17 -4.26 9.47 30.62 0.29 -3.97 16 17 C -0.12 -2.91 2.70 -52.16 -0.14 -3.05 16 18 C -0.12 -2.71 8.86 71.98 0.64 -2.07 16 19 C -0.11 -2.10 9.85 71.98 0.71 -1.39 16 20 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 21 H 0.02 0.94 7.45 -2.39 -0.02 0.93 16 22 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.33 14.57 8.22 -89.70 -0.74 13.83 16 25 H 0.01 0.35 7.79 -2.39 -0.02 0.33 16 26 H 0.06 2.19 7.06 -2.38 -0.02 2.18 16 27 H 0.11 2.30 8.05 -2.39 -0.02 2.28 16 28 H 0.09 2.23 7.94 -2.39 -0.02 2.21 16 29 H 0.05 1.31 7.84 -2.38 -0.02 1.29 16 30 H 0.08 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.05 1.19 7.90 -2.39 -0.02 1.17 16 32 H 0.06 1.10 7.90 -2.38 -0.02 1.08 16 33 H 0.07 1.16 7.92 -2.39 -0.02 1.15 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -60.57 275.79 2.76 -57.81 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.31 Total: 17.68 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.30 Total: -33.83 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.88 Total: -87.72 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.57 2.76 -57.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226259309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.217 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds