Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.50702 * 109.47378 * 120.00738 * 2 1 3 5 5 H 1.07995 * 120.00058 * 26.59350 * 4 2 1 6 6 C 1.37881 * 119.99756 * 206.59142 * 4 2 1 7 7 N 1.31509 * 120.00300 * 353.00312 * 6 4 2 8 8 Si 1.86799 * 119.99831 * 172.99990 * 6 4 2 9 9 H 1.48496 * 109.47377 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47195 * 300.00216 * 8 6 4 11 11 H 1.48505 * 109.47220 * 60.00145 * 8 6 4 12 12 N 1.46904 * 109.47168 * 240.00469 * 2 1 3 13 13 C 1.46906 * 110.99733 * 84.99604 * 12 2 1 14 14 C 1.52999 * 109.46868 * 180.02562 * 13 12 2 15 15 C 1.53006 * 112.85043 * 48.80449 * 14 13 12 16 16 C 1.53784 * 113.61818 * 277.50024 * 14 13 12 17 17 C 1.53779 * 87.08415 * 220.02119 * 16 14 13 18 18 C 1.53776 * 113.61661 * 180.02562 * 14 13 12 19 19 H 1.08998 * 109.47431 * 54.40399 * 1 2 3 20 20 H 1.09004 * 109.47341 * 174.40730 * 1 2 3 21 21 H 1.09006 * 109.46820 * 294.40184 * 1 2 3 22 22 H 0.97008 * 119.99959 * 354.42103 * 7 6 4 23 23 H 1.00896 * 111.00534 * 208.95497 * 12 2 1 24 24 H 1.08996 * 109.46949 * 299.99950 * 13 12 2 25 25 H 1.08991 * 109.46926 * 60.00752 * 13 12 2 26 26 H 1.09002 * 109.46885 * 69.66759 * 15 14 13 27 27 H 1.09002 * 109.46688 * 189.66513 * 15 14 13 28 28 H 1.08995 * 109.47167 * 309.66720 * 15 14 13 29 29 H 1.09001 * 113.60704 * 334.56708 * 16 14 13 30 30 H 1.08994 * 113.61879 * 105.46718 * 16 14 13 31 31 H 1.09002 * 113.61185 * 270.88554 * 17 16 14 32 32 H 1.08997 * 113.61567 * 139.97908 * 17 16 14 33 33 H 1.09000 * 113.61879 * 254.53232 * 18 14 13 34 34 H 1.09004 * 113.61099 * 25.42925 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 1.4239 -1.4672 1.7033 6 6 3.2688 -0.3947 1.7522 7 7 4.0672 0.4238 1.1025 8 14 3.8100 -1.1293 3.3822 9 1 5.1688 -0.6353 3.7211 10 1 2.8573 -0.7261 4.4475 11 1 3.8339 -2.6102 3.2742 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2228 -2.3469 14 6 2.5949 -0.5328 -3.5746 15 6 1.8652 -1.8580 -3.8040 16 6 4.1270 -0.6538 -3.6283 17 6 4.0162 -0.3921 -5.1396 18 6 2.6987 0.3401 -4.8363 19 1 -0.3634 0.5981 -0.8356 20 1 -0.3634 -1.0228 -0.1002 21 1 -0.3633 0.4246 0.9359 22 1 3.8218 0.7415 0.2194 23 1 2.9172 -1.1205 -1.0289 24 1 1.0869 0.6165 -2.5525 25 1 2.7587 1.0463 -2.1182 26 1 0.8411 -1.6589 -4.1198 27 1 2.3802 -2.4269 -4.5782 28 1 1.8546 -2.4321 -2.8776 29 1 4.6465 0.1358 -3.0854 30 1 4.4952 -1.6500 -3.3835 31 1 3.8861 -1.2983 -5.7312 32 1 4.7984 0.2599 -5.5283 33 1 1.9136 0.1465 -5.5671 34 1 2.8279 1.4013 -4.6235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226774390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -3.854785 kcal Electronic energy + Delta-G solvation = -13092.507866 eV Core-core repulsion = 11024.991314 eV Total energy + Delta-G solvation = -2067.516552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22874 -35.67404 -32.14589 -29.94293 -28.07791 -25.55353 -25.10944 -24.31605 -21.57657 -20.01783 -17.85240 -16.93623 -15.19568 -14.56579 -14.40386 -13.78766 -13.75235 -13.32826 -12.81793 -12.32194 -11.89938 -11.73441 -11.46623 -11.32824 -10.91006 -10.82008 -10.72101 -10.62424 -10.19681 -10.11182 -9.84570 -9.69029 -9.49763 -8.58477 -8.40663 -7.12664 -6.41272 -4.14781 3.43092 3.43882 3.63100 4.50029 4.85349 4.94809 5.01017 5.13378 5.25894 5.70321 5.76050 5.87108 5.95237 6.02362 6.08761 6.20029 6.25270 6.31669 6.43462 6.46086 6.49871 6.65682 6.75971 6.77861 6.79978 6.96354 7.09099 7.40726 7.98562 8.40456 8.55625 8.75251 8.88925 9.58691 10.95263 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.009703 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.995321 B = 2885.142891 C = 3218.486112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.187 3.813 3 H 0.003 0.997 4 C -0.590 4.590 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 1.068 2.932 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.287 1.287 12 N -0.684 5.684 13 C 0.071 3.929 14 C -0.078 4.078 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.140 4.140 18 C -0.134 4.134 19 H 0.020 0.980 20 H 0.044 0.956 21 H 0.041 0.959 22 H 0.267 0.733 23 H 0.338 0.662 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 -1.548 -9.239 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.020 0.980 4 C -0.629 4.629 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.545 5.545 8 Si 0.896 3.104 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.213 1.213 12 N -0.317 5.317 13 C -0.059 4.059 14 C -0.078 4.078 15 C -0.172 4.172 16 C -0.171 4.171 17 C -0.178 4.178 18 C -0.172 4.172 19 H 0.039 0.961 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.156 0.844 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.778 -1.761 -8.269 8.490 hybrid contribution -0.467 0.613 -0.960 1.231 sum -1.245 -1.148 -9.229 9.383 Atomic orbital electron populations 1.21646 0.98163 0.99748 0.98098 1.19271 0.91427 0.93228 0.88064 0.97959 1.22081 1.04758 1.24533 1.11530 0.92949 1.25935 0.93267 0.95258 1.03994 1.70828 1.38280 1.30936 1.14441 0.83561 0.76168 0.75791 0.74884 1.20885 1.21411 1.21330 1.61161 1.32789 1.32555 1.05168 1.21858 0.98597 0.94014 0.91386 1.21850 0.95082 0.96294 0.94572 1.21416 0.98598 0.95390 1.01812 1.22999 0.96497 1.01949 0.95609 1.22781 0.97747 1.00177 0.97085 1.22986 0.97441 0.99009 0.97798 0.96096 0.93650 0.94004 0.92203 0.84395 0.92749 0.96580 0.93301 0.94035 0.90546 0.90344 0.91689 0.90621 0.92147 0.92002 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.36 37.15 0.35 -2.33 16 2 C 0.19 4.77 2.10 -68.87 -0.14 4.62 16 3 H 0.00 0.08 6.76 -51.93 -0.35 -0.27 16 4 C -0.59 -16.53 8.28 -34.44 -0.29 -16.82 16 5 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 6 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 7 N -0.91 -26.96 13.55 55.43 0.75 -26.20 16 8 Si 1.07 25.01 29.91 -169.99 -5.08 19.93 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.68 -15.65 5.17 -107.95 -0.56 -16.21 16 13 C 0.07 1.42 4.96 -3.82 -0.02 1.40 16 14 C -0.08 -1.27 1.11 -153.69 -0.17 -1.44 16 15 C -0.11 -1.80 8.93 37.16 0.33 -1.47 16 16 C -0.13 -2.12 7.21 -25.92 -0.19 -2.31 16 17 C -0.14 -1.86 7.73 -25.94 -0.20 -2.06 16 18 C -0.13 -1.89 7.23 -25.94 -0.19 -2.08 16 19 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 20 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 21 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.27 7.90 6.94 -40.82 -0.28 7.61 16 23 H 0.34 8.33 8.35 -39.29 -0.33 8.00 16 24 H 0.05 1.07 7.55 -51.93 -0.39 0.68 16 25 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.57 7.34 -51.93 -0.38 0.19 16 28 H 0.08 1.35 7.27 -51.93 -0.38 0.97 16 29 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 30 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.08 0.92 7.64 -51.93 -0.40 0.52 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -28.49 272.27 -7.28 -35.77 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.88 Total: 4.61 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -0.61 Total: -22.00 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.19 Total: -42.41 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.49 -7.28 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226774390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds