Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.50702 * 109.47378 * 120.00738 * 2 1 3 5 5 H 1.07995 * 120.00058 * 26.59350 * 4 2 1 6 6 C 1.37881 * 119.99756 * 206.59142 * 4 2 1 7 7 N 1.31509 * 120.00300 * 353.00312 * 6 4 2 8 8 Si 1.86799 * 119.99831 * 172.99990 * 6 4 2 9 9 H 1.48496 * 109.47377 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47195 * 300.00216 * 8 6 4 11 11 H 1.48505 * 109.47220 * 60.00145 * 8 6 4 12 12 N 1.46904 * 109.47168 * 240.00469 * 2 1 3 13 13 C 1.46906 * 110.99733 * 84.99604 * 12 2 1 14 14 C 1.52999 * 109.46868 * 180.02562 * 13 12 2 15 15 C 1.53006 * 112.85043 * 48.80449 * 14 13 12 16 16 C 1.53784 * 113.61818 * 277.50024 * 14 13 12 17 17 C 1.53779 * 87.08415 * 220.02119 * 16 14 13 18 18 C 1.53776 * 113.61661 * 180.02562 * 14 13 12 19 19 H 1.08998 * 109.47431 * 54.40399 * 1 2 3 20 20 H 1.09004 * 109.47341 * 174.40730 * 1 2 3 21 21 H 1.09006 * 109.46820 * 294.40184 * 1 2 3 22 22 H 0.97008 * 119.99959 * 354.42103 * 7 6 4 23 23 H 1.00896 * 111.00534 * 208.95497 * 12 2 1 24 24 H 1.08996 * 109.46949 * 299.99950 * 13 12 2 25 25 H 1.08991 * 109.46926 * 60.00752 * 13 12 2 26 26 H 1.09002 * 109.46885 * 69.66759 * 15 14 13 27 27 H 1.09002 * 109.46688 * 189.66513 * 15 14 13 28 28 H 1.08995 * 109.47167 * 309.66720 * 15 14 13 29 29 H 1.09001 * 113.60704 * 334.56708 * 16 14 13 30 30 H 1.08994 * 113.61879 * 105.46718 * 16 14 13 31 31 H 1.09002 * 113.61185 * 270.88554 * 17 16 14 32 32 H 1.08997 * 113.61567 * 139.97908 * 17 16 14 33 33 H 1.09000 * 113.61879 * 254.53232 * 18 14 13 34 34 H 1.09004 * 113.61099 * 25.42925 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 1.4239 -1.4672 1.7033 6 6 3.2688 -0.3947 1.7522 7 7 4.0672 0.4238 1.1025 8 14 3.8100 -1.1293 3.3822 9 1 5.1688 -0.6353 3.7211 10 1 2.8573 -0.7261 4.4475 11 1 3.8339 -2.6102 3.2742 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2228 -2.3469 14 6 2.5949 -0.5328 -3.5746 15 6 1.8652 -1.8580 -3.8040 16 6 4.1270 -0.6538 -3.6283 17 6 4.0162 -0.3921 -5.1396 18 6 2.6987 0.3401 -4.8363 19 1 -0.3634 0.5981 -0.8356 20 1 -0.3634 -1.0228 -0.1002 21 1 -0.3633 0.4246 0.9359 22 1 3.8218 0.7415 0.2194 23 1 2.9172 -1.1205 -1.0289 24 1 1.0869 0.6165 -2.5525 25 1 2.7587 1.0463 -2.1182 26 1 0.8411 -1.6589 -4.1198 27 1 2.3802 -2.4269 -4.5782 28 1 1.8546 -2.4321 -2.8776 29 1 4.6465 0.1358 -3.0854 30 1 4.4952 -1.6500 -3.3835 31 1 3.8861 -1.2983 -5.7312 32 1 4.7984 0.2599 -5.5283 33 1 1.9136 0.1465 -5.5671 34 1 2.8279 1.4013 -4.6235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226774390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -20.787104 kcal Electronic energy + Delta-G solvation = -13093.242106 eV Core-core repulsion = 11024.991314 eV Total energy + Delta-G solvation = -2068.250792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53656 -37.58679 -34.15457 -31.66627 -29.55088 -27.10858 -26.58589 -26.18183 -23.02287 -21.93021 -19.30049 -18.84200 -16.63119 -16.27247 -15.94759 -15.64268 -15.48127 -15.05760 -14.34588 -13.79876 -13.46903 -13.18209 -12.98877 -12.80629 -12.69430 -12.63908 -12.40346 -12.06065 -11.96260 -11.80815 -11.34267 -11.05691 -10.88619 -10.70787 -10.44449 -9.05428 -8.67132 -6.41353 1.52988 1.59805 1.79778 2.54712 3.06140 3.57278 3.69800 3.77053 3.95540 4.04725 4.32625 4.48689 4.60127 4.72111 4.75373 4.81367 4.84514 4.87337 4.94509 4.98313 5.03571 5.07100 5.13323 5.24464 5.33102 5.45388 5.50854 5.70595 5.88846 6.16809 6.47238 6.63000 6.84858 7.40303 8.69795 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.009703 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.995321 B = 2885.142891 C = 3218.486112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.183 3.817 3 H -0.031 1.031 4 C -0.605 4.605 5 H 0.047 0.953 6 C -0.026 4.026 7 N -0.932 5.932 8 Si 1.115 2.885 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.270 1.270 12 N -0.674 5.674 13 C 0.075 3.925 14 C -0.083 4.083 15 C -0.109 4.109 16 C -0.143 4.143 17 C -0.123 4.123 18 C -0.126 4.126 19 H 0.039 0.961 20 H 0.048 0.952 21 H 0.042 0.958 22 H 0.255 0.745 23 H 0.324 0.676 24 H 0.057 0.943 25 H -0.008 1.008 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 -2.375 -10.264 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H -0.014 1.014 4 C -0.643 4.643 5 H 0.066 0.934 6 C -0.226 4.226 7 N -0.569 5.569 8 Si 0.937 3.063 9 H -0.212 1.212 10 H -0.197 1.197 11 H -0.195 1.195 12 N -0.304 5.304 13 C -0.055 4.055 14 C -0.084 4.084 15 C -0.166 4.166 16 C -0.180 4.180 17 C -0.160 4.160 18 C -0.164 4.164 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.141 0.859 24 H 0.076 0.924 25 H 0.011 0.989 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.219 -2.586 -9.317 9.746 hybrid contribution -0.374 0.900 -0.664 1.180 sum -1.593 -1.686 -9.982 10.248 Atomic orbital electron populations 1.21522 0.95802 1.00354 0.99029 1.19268 0.93342 0.91217 0.88633 1.01381 1.22377 1.04862 1.24467 1.12629 0.93419 1.27325 0.93492 0.94920 1.06816 1.70942 1.39055 1.32560 1.14316 0.82951 0.75864 0.76019 0.71452 1.21150 1.19728 1.19501 1.61121 1.31716 1.32574 1.05009 1.21904 0.98373 0.93330 0.91861 1.21929 0.95271 0.97115 0.94054 1.21352 0.99302 0.94582 1.01362 1.23006 0.95920 1.00972 0.98118 1.22737 0.97473 1.01037 0.94763 1.22949 0.98615 0.98428 0.96444 0.94226 0.93264 0.93873 0.93517 0.85901 0.92427 0.98944 0.92484 0.91628 0.93009 0.92608 0.92076 0.88631 0.90808 0.89955 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 9.36 71.98 0.67 -4.20 16 2 C 0.18 9.52 2.10 44.17 0.09 9.61 16 3 H -0.03 -1.83 6.76 -2.39 -0.02 -1.85 16 4 C -0.60 -34.27 8.28 25.60 0.21 -34.06 16 5 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 6 C -0.03 -1.50 5.45 84.66 0.46 -1.04 16 7 N -0.93 -56.62 13.55 21.45 0.29 -56.32 16 8 Si 1.12 50.20 29.91 68.60 2.05 52.25 16 9 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 N -0.67 -31.38 5.17 -495.46 -2.56 -33.95 16 13 C 0.08 3.02 4.96 86.30 0.43 3.44 16 14 C -0.08 -2.65 1.11 -51.65 -0.06 -2.71 16 15 C -0.11 -3.20 8.93 71.98 0.64 -2.56 16 16 C -0.14 -4.47 7.21 31.12 0.22 -4.25 16 17 C -0.12 -2.91 7.73 31.11 0.24 -2.67 16 18 C -0.13 -3.24 7.23 31.11 0.22 -3.02 16 19 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 20 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 22 H 0.25 15.72 6.94 -92.70 -0.64 15.07 16 23 H 0.32 16.51 8.35 -89.70 -0.75 15.76 16 24 H 0.06 2.25 7.55 -2.39 -0.02 2.23 16 25 H -0.01 -0.34 7.86 -2.39 -0.02 -0.36 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.61 7.34 -2.39 -0.02 1.59 16 28 H 0.05 1.77 7.27 -2.39 -0.02 1.76 16 29 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 30 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.10 1.93 7.64 -2.39 -0.02 1.91 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.07 1.91 8.10 -2.38 -0.02 1.89 16 Total: -1.00 -61.42 272.27 3.35 -58.07 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.43 Total: 21.39 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 3.14 Total: -41.44 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.27 Total: -90.27 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -61.42 3.35 -58.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226774390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.287 kcal (2) G-P(sol) polarization free energy of solvation -61.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds