Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.46954 * 2 1 4 4 C 1.50694 * 109.47443 * 240.00023 * 2 1 3 5 5 H 1.07995 * 120.00069 * 245.63593 * 4 2 1 6 6 C 1.37885 * 120.00203 * 65.63068 * 4 2 1 7 7 N 1.31507 * 120.00127 * 197.47607 * 6 4 2 8 8 Si 1.86798 * 119.99673 * 17.47845 * 6 4 2 9 9 H 1.48495 * 109.47146 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47258 * 300.00091 * 8 6 4 11 11 H 1.48502 * 109.47232 * 59.99941 * 8 6 4 12 12 N 1.46904 * 109.47290 * 119.99719 * 2 1 3 13 13 C 1.46901 * 111.00101 * 275.00422 * 12 2 1 14 14 C 1.52994 * 109.47039 * 179.97438 * 13 12 2 15 15 C 1.52997 * 112.85200 * 48.80272 * 14 13 12 16 16 C 1.53789 * 113.61401 * 277.49324 * 14 13 12 17 17 C 1.53781 * 87.08041 * 220.02076 * 16 14 13 18 18 C 1.53783 * 87.08260 * 25.43487 * 17 16 14 19 19 H 1.09001 * 109.46974 * 66.37391 * 1 2 3 20 20 H 1.08998 * 109.46801 * 186.36938 * 1 2 3 21 21 H 1.08997 * 109.47392 * 306.37399 * 1 2 3 22 22 H 0.97004 * 120.00272 * 354.91293 * 7 6 4 23 23 H 1.00898 * 110.99933 * 151.04800 * 12 2 1 24 24 H 1.09000 * 109.46700 * 300.00154 * 13 12 2 25 25 H 1.09001 * 109.47089 * 59.99458 * 13 12 2 26 26 H 1.09000 * 109.47083 * 69.66364 * 15 14 13 27 27 H 1.09001 * 109.47325 * 189.66989 * 15 14 13 28 28 H 1.09001 * 109.47200 * 309.66673 * 15 14 13 29 29 H 1.09002 * 113.61449 * 334.57226 * 16 14 13 30 30 H 1.09001 * 113.60988 * 105.46973 * 16 14 13 31 31 H 1.09001 * 113.61528 * 270.88030 * 17 16 14 32 32 H 1.09001 * 113.60970 * 139.98181 * 17 16 14 33 33 H 1.08995 * 113.61109 * 220.02030 * 18 17 16 34 34 H 1.08998 * 113.61305 * 89.11499 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5761 -1.6384 -1.1339 6 6 1.7977 -0.1755 -2.4794 7 7 1.9170 -0.9292 -3.5505 8 14 1.3104 1.6197 -2.6501 9 1 1.1176 1.9459 -4.0859 10 1 0.0442 1.8612 -1.9128 11 1 2.3826 2.4793 -2.0874 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 3.8586 -1.3463 3.2867 16 6 1.5025 -1.3279 4.3092 17 6 2.1609 -0.8688 5.6209 18 6 2.6983 0.3398 4.8364 19 1 -0.3633 0.4119 -0.9415 20 1 -0.3633 -1.0213 0.1140 21 1 -0.3634 0.6094 0.8274 22 1 2.2411 -1.8399 -3.4691 23 1 2.9173 -1.1204 1.0288 24 1 2.7587 1.0463 2.1182 25 1 1.0870 0.6164 2.5525 26 1 4.6962 -0.6693 3.1194 27 1 4.0771 -1.9915 4.1377 28 1 3.7025 -1.9578 2.3979 29 1 0.4987 -0.9294 4.1616 30 1 1.5603 -2.4039 4.1448 31 1 2.9418 -1.5412 5.9762 32 1 1.4451 -0.6015 6.3983 33 1 3.7213 0.6100 5.0978 34 1 2.0214 1.1941 4.8330 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226774399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = -13.664228 kcal Electronic energy + Delta-G solvation = -12948.001288 eV Core-core repulsion = 10880.059367 eV Total energy + Delta-G solvation = -2067.941921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50738 -37.46230 -34.55288 -31.87301 -29.44605 -27.37948 -26.54080 -26.18042 -22.80032 -21.44115 -19.77965 -18.97277 -16.97226 -16.44951 -15.93367 -15.56187 -15.30210 -14.68485 -14.42694 -13.96169 -13.79874 -13.36481 -13.17261 -12.93154 -12.72709 -12.48640 -12.22985 -11.99429 -11.83047 -11.60166 -11.30347 -11.00990 -10.93790 -10.88573 -10.39475 -9.14414 -8.75210 -6.39487 1.43612 1.49948 1.70131 2.45778 3.03332 3.43481 3.77975 3.79464 3.95135 4.04466 4.35076 4.49526 4.61456 4.70894 4.76787 4.84648 4.88702 4.92774 4.95907 4.99397 5.06665 5.10272 5.11965 5.23935 5.30283 5.54641 5.59352 5.69220 5.79116 6.00388 6.30233 6.69147 6.80084 7.38888 8.61005 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.059242 B = 0.008445 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.528119 B = 3314.718522 C = 3437.763860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.187 3.813 3 H -0.007 1.007 4 C -0.608 4.608 5 H 0.022 0.978 6 C -0.019 4.019 7 N -0.936 5.936 8 Si 1.086 2.914 9 H -0.286 1.286 10 H -0.243 1.243 11 H -0.268 1.268 12 N -0.683 5.683 13 C 0.073 3.927 14 C -0.087 4.087 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.127 4.127 19 H 0.044 0.956 20 H 0.038 0.962 21 H 0.047 0.953 22 H 0.252 0.748 23 H 0.332 0.668 24 H 0.013 0.987 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 3.995 17.139 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.010 0.990 4 C -0.646 4.646 5 H 0.040 0.960 6 C -0.218 4.218 7 N -0.572 5.572 8 Si 0.907 3.093 9 H -0.212 1.212 10 H -0.168 1.168 11 H -0.194 1.194 12 N -0.315 5.315 13 C -0.056 4.056 14 C -0.088 4.088 15 C -0.185 4.185 16 C -0.162 4.162 17 C -0.167 4.167 18 C -0.165 4.165 19 H 0.063 0.937 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.150 0.850 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.559 4.871 16.210 16.935 hybrid contribution 1.416 -1.222 0.219 1.884 sum 0.858 3.649 16.430 16.852 Atomic orbital electron populations 1.21997 0.97156 1.00161 0.99501 1.19307 0.93012 0.91840 0.88076 0.98978 1.22337 1.39873 1.08866 0.93558 0.96004 1.27180 0.94222 1.08551 0.91804 1.70984 1.44125 1.09468 1.32614 0.83547 0.78782 0.70580 0.76415 1.21248 1.16776 1.19370 1.60588 1.32604 1.33331 1.04948 1.22012 0.99360 0.93331 0.90929 1.21900 0.96474 0.97274 0.93103 1.21545 0.95673 0.99541 1.01722 1.22894 0.97646 0.99526 0.96179 1.22785 1.00327 0.97531 0.96048 1.22981 1.01829 0.97117 0.94552 0.93745 0.94265 0.93435 0.93917 0.84964 0.96848 0.91648 0.92589 0.90964 0.93456 0.90875 0.92451 0.89529 0.90498 0.90820 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 9.05 71.98 0.65 -5.19 16 2 C 0.19 9.07 2.18 44.17 0.10 9.17 16 3 H -0.01 -0.35 6.45 -2.38 -0.02 -0.36 16 4 C -0.61 -35.39 8.83 25.60 0.23 -35.16 16 5 H 0.02 1.39 7.92 -2.91 -0.02 1.37 16 6 C -0.02 -1.12 5.29 84.66 0.45 -0.68 16 7 N -0.94 -59.51 13.69 21.45 0.29 -59.21 16 8 Si 1.09 50.65 26.29 68.60 1.80 52.46 16 9 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.24 -10.14 5.76 99.48 0.57 -9.57 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.68 -28.84 6.17 -495.45 -3.06 -31.89 16 13 C 0.07 2.48 5.02 86.30 0.43 2.91 16 14 C -0.09 -2.35 1.17 -51.65 -0.06 -2.41 16 15 C -0.13 -3.36 8.72 71.98 0.63 -2.73 16 16 C -0.12 -3.13 7.21 31.12 0.22 -2.91 16 17 C -0.13 -2.48 7.73 31.12 0.24 -2.24 16 18 C -0.13 -2.68 7.23 31.12 0.23 -2.46 16 19 H 0.04 2.03 4.88 -2.39 -0.01 2.01 16 20 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.05 1.82 7.62 -2.39 -0.02 1.80 16 22 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 23 H 0.33 14.42 6.13 -89.70 -0.55 13.87 16 24 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 25 H 0.07 2.18 7.36 -2.39 -0.02 2.16 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.59 7.34 -2.39 -0.02 1.58 16 28 H 0.05 1.45 6.30 -2.39 -0.02 1.43 16 29 H 0.07 1.90 7.96 -2.39 -0.02 1.88 16 30 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 31 H 0.09 1.49 7.64 -2.39 -0.02 1.48 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 34 H 0.08 1.68 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -63.99 263.67 2.49 -61.50 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.34 Total: 18.85 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.11 Total: -41.70 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -2.76 Total: -91.11 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.80 Total: 52.46 kcal Total: -63.99 2.49 -61.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226774399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.832 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds