Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47075 * 2 1 4 4 C 1.46846 * 111.00223 * 293.95555 * 3 2 1 5 5 C 1.53032 * 109.52465 * 174.16199 * 4 3 2 6 6 C 1.53120 * 109.27915 * 59.17788 * 5 4 3 7 7 C 1.53116 * 109.16209 * 302.34612 * 6 5 4 8 8 C 1.53004 * 109.50554 * 297.67346 * 7 6 5 9 9 C 1.50701 * 109.50506 * 177.59442 * 7 6 5 10 10 H 1.08003 * 120.00069 * 237.93277 * 9 7 6 11 11 C 1.37876 * 119.99994 * 57.92958 * 9 7 6 12 12 N 1.31517 * 119.99846 * 6.33605 * 11 9 7 13 13 Si 1.86798 * 120.00071 * 186.33278 * 11 9 7 14 14 H 1.48504 * 109.46988 * 265.07755 * 13 11 9 15 15 H 1.48504 * 109.46961 * 25.07327 * 13 11 9 16 16 H 1.48496 * 109.47215 * 145.07675 * 13 11 9 17 17 C 1.46849 * 110.99435 * 169.70253 * 3 2 1 18 18 H 1.09005 * 109.46906 * 299.99407 * 1 2 3 19 19 H 1.09003 * 109.47605 * 59.99803 * 1 2 3 20 20 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46814 * 239.99837 * 2 1 3 22 22 H 1.09001 * 109.46920 * 120.00494 * 2 1 3 23 23 H 1.08997 * 109.45936 * 54.14339 * 4 3 2 24 24 H 1.08995 * 109.46135 * 294.18012 * 4 3 2 25 25 H 1.09003 * 109.50175 * 299.24011 * 5 4 3 26 26 H 1.08997 * 109.50645 * 179.12164 * 5 4 3 27 27 H 1.09005 * 109.52415 * 182.44358 * 6 5 4 28 28 H 1.09004 * 109.57389 * 62.28115 * 6 5 4 29 29 H 1.08995 * 109.46820 * 306.51986 * 8 7 6 30 30 H 1.09000 * 109.46779 * 66.51256 * 8 7 6 31 31 H 1.08997 * 109.47312 * 186.50985 * 8 7 6 32 32 H 0.96996 * 120.00089 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.42806 * 65.80895 * 17 3 2 34 34 H 1.09001 * 109.49844 * 305.83917 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6703 2.0667 -1.2528 5 6 2.0656 3.5421 -1.1596 6 6 3.5714 3.6468 -0.9025 7 6 3.9159 2.8880 0.3819 8 6 3.1957 3.5353 1.5666 9 6 5.4046 2.9361 0.6109 10 1 5.9687 2.0185 0.6904 11 6 6.0466 4.1515 0.7188 12 7 5.3467 5.2646 0.7471 13 14 7.9104 4.2172 0.8249 14 1 8.3234 4.2712 2.2504 15 1 8.4854 3.0048 0.1887 16 1 8.4040 5.4275 0.1203 17 6 3.4668 1.4314 0.2451 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 0.5963 1.9883 -1.4216 24 1 2.2029 1.5996 -2.0812 25 1 1.5228 4.0132 -0.3400 26 1 1.8204 4.0444 -2.0954 27 1 3.8501 4.6949 -0.7922 28 1 4.1161 3.2112 -1.7402 29 1 3.4240 4.6008 1.5923 30 1 2.1201 3.3968 1.4576 31 1 3.5300 3.0695 2.4936 32 1 5.7982 6.1196 0.8234 33 1 3.9910 0.9667 -0.5900 34 1 3.6977 0.8922 1.1639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238237058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = -25.803804 kcal Electronic energy + Delta-G solvation = -13514.539875 eV Core-core repulsion = 11446.071542 eV Total energy + Delta-G solvation = -2068.468333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19636 -36.38447 -33.87008 -32.14874 -30.63598 -27.35904 -26.87132 -24.95962 -23.19246 -21.84599 -19.52075 -18.07907 -16.82296 -16.43137 -15.91240 -15.24079 -15.01800 -14.63239 -14.43360 -13.84400 -13.33836 -13.03936 -12.99115 -12.79951 -12.66011 -12.44595 -12.18402 -12.12076 -11.87422 -11.59148 -11.51921 -11.16991 -10.66863 -10.40450 -10.28077 -9.03640 -7.97478 -6.12807 1.40636 1.43006 1.52080 2.45672 3.17764 3.24417 4.12875 4.22357 4.29848 4.40096 4.58977 4.64856 4.70275 4.75107 4.89342 4.96670 5.01887 5.04659 5.17058 5.22741 5.24848 5.40634 5.44511 5.50241 5.61995 5.71999 5.82747 6.16481 6.25021 6.36082 6.46747 6.54631 6.96373 7.53527 9.01293 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.058350 B = 0.010564 C = 0.009912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.744481 B = 2649.972424 C = 2824.158146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 N -0.544 5.544 4 C 0.064 3.936 5 C -0.113 4.113 6 C -0.098 4.098 7 C 0.064 3.936 8 C -0.101 4.101 9 C -0.531 4.531 10 H 0.042 0.958 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.943 3.057 14 H -0.280 1.280 15 H -0.274 1.274 16 H -0.283 1.283 17 C 0.084 3.916 18 H 0.055 0.945 19 H 0.057 0.943 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.019 0.981 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.006 0.994 32 H 0.258 0.742 33 H 0.005 0.995 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -6.514 -2.975 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 N -0.269 5.269 4 C -0.064 4.064 5 C -0.151 4.151 6 C -0.136 4.136 7 C 0.064 3.936 8 C -0.159 4.159 9 C -0.569 4.569 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.540 5.540 13 Si 0.770 3.230 14 H -0.206 1.206 15 H -0.199 1.199 16 H -0.209 1.209 17 C -0.044 4.044 18 H 0.075 0.925 19 H 0.076 0.924 20 H 0.094 0.906 21 H 0.045 0.955 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.809 -6.082 -2.584 10.230 hybrid contribution 1.816 -0.166 -0.476 1.885 sum -5.993 -6.247 -3.059 9.182 Atomic orbital electron populations 1.21740 0.93296 1.02280 1.02233 1.22153 0.97305 0.88511 1.00251 1.61957 1.14226 1.15845 1.34852 1.22070 1.00594 0.94297 0.89407 1.21625 0.96781 0.95840 1.00823 1.21453 0.93700 1.01759 0.96725 1.18152 0.92845 0.90001 0.92615 1.21500 0.97021 1.00892 0.96515 1.21436 0.93965 0.91990 1.49538 0.93926 1.25528 1.01483 0.95586 0.94914 1.70003 1.35662 0.97665 1.50693 0.85781 0.81891 0.77423 0.77918 1.20558 1.19851 1.20856 1.21984 0.86148 0.98579 0.97649 0.92542 0.92394 0.90640 0.95453 0.91332 0.89142 0.96270 0.92312 0.91588 0.92319 0.96581 0.93343 0.94335 0.97501 0.93298 0.97643 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.85 71.98 0.71 -2.43 16 2 C 0.05 1.32 5.68 86.30 0.49 1.81 16 3 N -0.54 -19.80 3.83 -896.38 -3.43 -23.23 16 4 C 0.06 2.17 5.29 86.32 0.46 2.63 16 5 C -0.11 -4.33 5.74 30.65 0.18 -4.16 16 6 C -0.10 -4.69 4.51 30.67 0.14 -4.55 16 7 C 0.06 3.21 0.49 -52.87 -0.03 3.18 16 8 C -0.10 -5.08 7.63 71.98 0.55 -4.53 16 9 C -0.53 -29.42 8.01 25.60 0.20 -29.21 16 10 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 11 C 0.02 1.34 5.13 84.65 0.43 1.77 16 12 N -0.90 -50.97 9.51 21.45 0.20 -50.77 16 13 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 C 0.08 3.66 4.12 86.33 0.36 4.02 16 18 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 19 H 0.06 1.25 6.44 -2.39 -0.02 1.24 16 20 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 22 H 0.07 1.97 7.98 -2.39 -0.02 1.95 16 23 H 0.09 2.55 6.22 -2.39 -0.01 2.54 16 24 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 2.33 6.74 -2.39 -0.02 2.31 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 3.14 6.24 -2.38 -0.01 3.12 16 28 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 2.64 6.23 -2.39 -0.01 2.63 16 30 H 0.04 1.76 6.18 -2.39 -0.01 1.75 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.05 2.27 8.01 -2.39 -0.02 2.25 16 Total: -1.00 -58.18 255.86 3.33 -54.85 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.04 Total: 4.66 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.49 Total: -31.48 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -3.23 Total: -74.00 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -58.18 3.33 -54.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238237058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.044 kcal (2) G-P(sol) polarization free energy of solvation -58.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds