Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46797 * 2 1 4 4 N 1.46898 * 109.46593 * 239.99978 * 2 1 3 5 5 C 1.52996 * 109.47057 * 120.00238 * 2 1 3 6 6 C 1.53004 * 109.47049 * 185.00014 * 5 2 1 7 7 H 1.09010 * 115.55763 * 330.70036 * 6 5 2 8 8 C 1.52998 * 117.50015 * 116.38510 * 6 5 2 9 9 H 1.08999 * 117.51699 * 214.96888 * 8 6 5 10 10 C 1.50700 * 117.49909 * 0.02562 * 8 6 5 11 11 H 1.07998 * 120.00437 * 93.43935 * 10 8 6 12 12 C 1.37879 * 119.99565 * 273.70993 * 10 8 6 13 13 N 1.31515 * 120.00259 * 359.73057 * 12 10 8 14 14 Si 1.86797 * 119.99676 * 179.72344 * 12 10 8 15 15 H 1.48503 * 109.47246 * 60.00647 * 14 12 10 16 16 H 1.48507 * 109.47038 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47445 * 300.00254 * 14 12 10 18 18 C 1.52995 * 117.50261 * 185.01428 * 6 5 2 19 19 C 1.52990 * 117.50353 * 145.01895 * 18 6 5 20 20 C 1.53003 * 117.51417 * 359.97438 * 18 6 5 21 21 H 1.08997 * 109.47299 * 59.99729 * 1 2 3 22 22 H 1.09001 * 109.46797 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46791 * 299.99822 * 1 2 3 24 24 H 1.00901 * 111.00353 * 296.04313 * 4 2 1 25 25 H 1.00905 * 111.00146 * 59.99963 * 4 2 1 26 26 H 1.08993 * 109.47510 * 64.99709 * 5 2 1 27 27 H 1.09001 * 109.47083 * 304.99647 * 5 2 1 28 28 H 0.96996 * 119.99875 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.47366 * 180.02562 * 19 18 6 30 30 H 1.09009 * 109.47349 * 300.01509 * 19 18 6 31 31 H 1.09000 * 109.47182 * 60.01299 * 19 18 6 32 32 H 1.09001 * 109.47612 * 345.45230 * 20 18 6 33 33 H 1.09003 * 109.47197 * 105.45838 * 20 18 6 34 34 H 1.09007 * 109.46928 * 225.45005 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 1 4.0721 -0.5381 0.3517 8 6 4.1698 0.1511 2.4929 9 1 5.0751 0.7291 2.3072 10 6 3.2182 0.7395 3.5024 11 1 2.9560 0.1796 4.3879 12 6 2.6777 1.9906 3.2927 13 7 2.9969 2.6725 2.2144 14 14 1.4921 2.7168 4.5402 15 1 2.1694 2.8347 5.8565 16 1 1.0568 4.0616 4.0848 17 1 0.3072 1.8314 4.6707 18 6 4.2804 -1.3738 2.4319 19 6 5.6530 -1.9704 2.1146 20 6 3.4166 -2.1837 3.4008 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7502 -1.6649 -1.1909 25 1 1.6961 -0.2350 -2.0386 26 1 1.7517 -1.7715 1.2056 27 1 1.6055 -0.2618 2.1369 28 1 2.6170 3.5527 2.0671 29 1 6.0406 -2.4797 2.9969 30 1 5.5587 -2.6837 1.2956 31 1 6.3376 -1.1732 1.8250 32 1 2.3734 -1.8866 3.2931 33 1 3.5170 -3.2457 3.1764 34 1 3.7441 -1.9960 4.4234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238425638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -2.540398 kcal Electronic energy + Delta-G solvation = -13272.540044 eV Core-core repulsion = 11205.080488 eV Total energy + Delta-G solvation = -2067.459556 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.88844 -35.28423 -32.23550 -29.07849 -28.10667 -26.77371 -26.40371 -24.38282 -20.31181 -18.98703 -17.39280 -15.95320 -15.46250 -14.52203 -13.96095 -13.57719 -13.35566 -12.88757 -12.47997 -12.30961 -11.90888 -11.64646 -11.50902 -11.20455 -10.93734 -10.84834 -10.63387 -10.44316 -10.14795 -10.04317 -9.67857 -9.13870 -8.56557 -8.10538 -7.88865 -7.78227 -5.96017 -3.96742 3.31846 3.37279 3.39976 4.44848 5.13130 5.20862 5.42152 5.67325 5.78077 5.91908 6.03512 6.08848 6.27594 6.40018 6.43502 6.47229 6.51442 6.57939 6.74460 6.77481 6.98090 7.02583 7.18443 7.23187 7.32041 7.41074 7.75418 7.80536 7.88173 8.00423 8.03091 8.57058 9.02609 9.63897 11.13632 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.016817 C = 0.011638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.702360 B = 1664.586393 C = 2405.416090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.094 0.906 4 N -0.839 5.839 5 C -0.060 4.060 6 C -0.137 4.137 7 H 0.082 0.918 8 C 0.039 3.961 9 H 0.054 0.946 10 C -0.489 4.489 11 H 0.058 0.942 12 C 0.071 3.929 13 N -0.878 5.878 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.174 4.174 19 C -0.102 4.102 20 C -0.093 4.093 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.328 0.672 25 H 0.327 0.673 26 H 0.029 0.971 27 H 0.084 0.916 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -5.957 -3.116 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.112 0.888 4 N -0.367 5.367 5 C -0.097 4.097 6 C -0.156 4.156 7 H 0.100 0.900 8 C 0.021 3.979 9 H 0.072 0.928 10 C -0.527 4.527 11 H 0.076 0.924 12 C -0.131 4.131 13 N -0.515 5.515 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.174 4.174 19 C -0.160 4.160 20 C -0.150 4.150 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.038 -5.580 -2.933 6.625 hybrid contribution -1.758 0.322 0.344 1.820 sum -3.796 -5.258 -2.589 6.982 Atomic orbital electron populations 1.22624 0.99479 1.00597 1.01470 1.21509 0.90242 1.00089 0.90361 0.88811 1.58954 1.67627 1.05877 1.04216 1.20970 0.95402 0.96594 0.96759 1.22214 0.93382 1.06771 0.93199 0.89959 1.20023 0.97041 0.85775 0.95047 0.92839 1.20509 1.25792 1.00891 1.05482 0.92424 1.24925 0.96399 0.96798 0.95008 1.69990 1.43405 1.12280 1.25848 0.86856 0.81782 0.78397 0.82155 1.20279 1.21369 1.20315 1.21607 0.95717 0.97418 1.02700 1.21199 0.95900 0.99445 0.99409 1.21064 0.99776 0.96366 0.97821 0.93855 0.93742 0.92186 0.86036 0.86164 0.95191 0.89758 0.93189 0.93845 0.94113 0.93443 0.92340 0.95219 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.48 37.16 0.35 -2.66 16 2 C 0.09 1.70 3.35 -67.71 -0.23 1.48 16 3 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 4 N -0.84 -13.88 8.69 -4.67 -0.04 -13.92 16 5 C -0.06 -1.27 3.48 -26.73 -0.09 -1.36 16 6 C -0.14 -3.12 5.33 -90.62 -0.48 -3.60 16 7 H 0.08 1.95 7.69 -51.92 -0.40 1.55 16 8 C 0.04 1.00 5.11 -91.77 -0.47 0.53 16 9 H 0.05 1.48 8.05 -51.93 -0.42 1.06 16 10 C -0.49 -13.10 6.62 -34.44 -0.23 -13.33 16 11 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 12 C 0.07 1.93 5.33 -17.82 -0.09 1.83 16 13 N -0.88 -24.70 13.29 55.43 0.74 -23.96 16 14 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.17 -3.77 2.70 -154.51 -0.42 -4.18 16 19 C -0.10 -1.92 9.84 37.15 0.37 -1.56 16 20 C -0.09 -1.86 8.24 37.16 0.31 -1.56 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.33 4.89 8.98 -39.29 -0.35 4.54 16 25 H 0.33 4.72 9.04 -39.29 -0.36 4.36 16 26 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 27 H 0.08 2.01 5.87 -51.93 -0.30 1.70 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 32 H 0.06 1.21 5.98 -51.93 -0.31 0.90 16 33 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.04 0.88 8.02 -51.93 -0.42 0.46 16 LS Contribution 273.99 15.07 4.13 4.13 Total: -1.00 -27.37 273.99 -7.02 -34.39 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.84 Total: 7.90 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -0.99 Total: -24.41 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.70 Total: -37.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.37 -7.02 -34.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238425638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.851 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds