Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46797 * 2 1 4 4 N 1.46898 * 109.46593 * 239.99978 * 2 1 3 5 5 C 1.52996 * 109.47057 * 120.00238 * 2 1 3 6 6 C 1.53004 * 109.47049 * 185.00014 * 5 2 1 7 7 H 1.09010 * 115.55763 * 330.70036 * 6 5 2 8 8 C 1.52998 * 117.50015 * 116.38510 * 6 5 2 9 9 H 1.08999 * 117.51699 * 214.96888 * 8 6 5 10 10 C 1.50700 * 117.49909 * 0.02562 * 8 6 5 11 11 H 1.07998 * 120.00437 * 93.43935 * 10 8 6 12 12 C 1.37879 * 119.99565 * 273.70993 * 10 8 6 13 13 N 1.31515 * 120.00259 * 359.73057 * 12 10 8 14 14 Si 1.86797 * 119.99676 * 179.72344 * 12 10 8 15 15 H 1.48503 * 109.47246 * 60.00647 * 14 12 10 16 16 H 1.48507 * 109.47038 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47445 * 300.00254 * 14 12 10 18 18 C 1.52995 * 117.50261 * 185.01428 * 6 5 2 19 19 C 1.52990 * 117.50353 * 145.01895 * 18 6 5 20 20 C 1.53003 * 117.51417 * 359.97438 * 18 6 5 21 21 H 1.08997 * 109.47299 * 59.99729 * 1 2 3 22 22 H 1.09001 * 109.46797 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46791 * 299.99822 * 1 2 3 24 24 H 1.00901 * 111.00353 * 296.04313 * 4 2 1 25 25 H 1.00905 * 111.00146 * 59.99963 * 4 2 1 26 26 H 1.08993 * 109.47510 * 64.99709 * 5 2 1 27 27 H 1.09001 * 109.47083 * 304.99647 * 5 2 1 28 28 H 0.96996 * 119.99875 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.47366 * 180.02562 * 19 18 6 30 30 H 1.09009 * 109.47349 * 300.01509 * 19 18 6 31 31 H 1.09000 * 109.47182 * 60.01299 * 19 18 6 32 32 H 1.09001 * 109.47612 * 345.45230 * 20 18 6 33 33 H 1.09003 * 109.47197 * 105.45838 * 20 18 6 34 34 H 1.09007 * 109.46928 * 225.45005 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 1 4.0721 -0.5381 0.3517 8 6 4.1698 0.1511 2.4929 9 1 5.0751 0.7291 2.3072 10 6 3.2182 0.7395 3.5024 11 1 2.9560 0.1796 4.3879 12 6 2.6777 1.9906 3.2927 13 7 2.9969 2.6725 2.2144 14 14 1.4921 2.7168 4.5402 15 1 2.1694 2.8347 5.8565 16 1 1.0568 4.0616 4.0848 17 1 0.3072 1.8314 4.6707 18 6 4.2804 -1.3738 2.4319 19 6 5.6530 -1.9704 2.1146 20 6 3.4166 -2.1837 3.4008 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7502 -1.6649 -1.1909 25 1 1.6961 -0.2350 -2.0386 26 1 1.7517 -1.7715 1.2056 27 1 1.6055 -0.2618 2.1369 28 1 2.6170 3.5527 2.0671 29 1 6.0406 -2.4797 2.9969 30 1 5.5587 -2.6837 1.2956 31 1 6.3376 -1.1732 1.8250 32 1 2.3734 -1.8866 3.2931 33 1 3.5170 -3.2457 3.1764 34 1 3.7441 -1.9960 4.4234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238425638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -19.209333 kcal Electronic energy + Delta-G solvation = -13273.262863 eV Core-core repulsion = 11205.080488 eV Total energy + Delta-G solvation = -2068.182375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65601 -36.80633 -34.28840 -30.67261 -29.60144 -28.37469 -28.22002 -26.22421 -21.96186 -20.82251 -19.12124 -17.93781 -17.03219 -16.48538 -15.48595 -15.23461 -15.06074 -14.55263 -13.92030 -13.77501 -13.67779 -13.32611 -13.06508 -12.81819 -12.72252 -12.62691 -12.41447 -12.24175 -11.91126 -11.64748 -11.36964 -11.13455 -10.60058 -9.80648 -9.62032 -9.40210 -8.03528 -6.09354 1.42219 1.43238 1.49828 2.45975 3.19773 3.51108 3.85210 4.14079 4.31139 4.42302 4.44202 4.54807 4.61259 4.76511 4.92348 4.93894 5.02374 5.09040 5.13266 5.20680 5.31491 5.32533 5.44196 5.54861 5.56967 5.71388 5.78975 5.92570 6.07430 6.44224 6.51700 6.81459 6.94882 7.53797 9.06128 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.016817 C = 0.011638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.702360 B = 1664.586393 C = 2405.416090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.049 0.951 4 N -0.842 5.842 5 C -0.052 4.052 6 C -0.130 4.130 7 H 0.070 0.930 8 C 0.000 4.000 9 H 0.017 0.983 10 C -0.493 4.493 11 H 0.055 0.945 12 C 0.028 3.972 13 N -0.909 5.909 14 Si 0.937 3.063 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.269 1.269 18 C -0.156 4.156 19 C -0.101 4.101 20 C -0.091 4.091 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.342 0.658 25 H 0.342 0.658 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.256 0.744 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -7.711 -3.181 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 H 0.068 0.932 4 N -0.372 5.372 5 C -0.089 4.089 6 C -0.149 4.149 7 H 0.088 0.912 8 C -0.018 4.018 9 H 0.035 0.965 10 C -0.530 4.530 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.547 5.547 14 Si 0.763 3.237 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.148 4.148 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.155 0.845 25 H 0.154 0.846 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.961 -7.351 -2.998 8.473 hybrid contribution -1.398 0.844 0.334 1.667 sum -4.359 -6.507 -2.665 8.273 Atomic orbital electron populations 1.22511 0.97153 1.02040 1.01600 1.21197 0.92019 0.97620 0.90737 0.93226 1.58786 1.67898 1.06690 1.03808 1.20842 0.93927 0.97603 0.96552 1.22152 0.94561 1.06042 0.92132 0.91168 1.19885 0.96240 0.88449 0.97227 0.96532 1.20669 1.25701 1.01134 1.05530 0.92730 1.25569 0.97847 0.97240 0.96525 1.70117 1.44633 1.12447 1.27511 0.85945 0.80104 0.77649 0.79998 1.19934 1.21334 1.19399 1.21810 0.97250 0.94968 1.01537 1.21209 0.93917 0.99576 1.01097 1.21058 0.98700 0.97857 0.97169 0.92035 0.91560 0.93801 0.84464 0.84565 0.93176 0.92610 0.93463 0.91836 0.92034 0.94427 0.93316 0.92061 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 9.48 71.99 0.68 -4.77 16 2 C 0.10 3.62 3.35 44.92 0.15 3.77 16 3 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 4 N -0.84 -26.41 8.69 -168.67 -1.47 -27.88 16 5 C -0.05 -2.16 3.48 30.59 0.11 -2.05 16 6 C -0.13 -5.94 5.33 -10.79 -0.06 -5.99 16 7 H 0.07 3.35 7.69 -2.38 -0.02 3.34 16 8 C 0.00 0.02 5.11 -11.54 -0.06 -0.04 16 9 H 0.02 0.97 8.05 -2.39 -0.02 0.95 16 10 C -0.49 -26.88 6.62 25.60 0.17 -26.71 16 11 H 0.05 2.94 7.05 -2.91 -0.02 2.92 16 12 C 0.03 1.54 5.33 84.66 0.45 1.99 16 13 N -0.91 -52.77 13.29 21.45 0.28 -52.49 16 14 Si 0.94 43.32 29.54 68.60 2.03 45.34 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C -0.16 -6.56 2.70 -52.18 -0.14 -6.70 16 19 C -0.10 -3.59 9.84 71.98 0.71 -2.88 16 20 C -0.09 -3.43 8.24 71.98 0.59 -2.84 16 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.34 9.24 8.98 -89.69 -0.81 8.43 16 25 H 0.34 9.19 9.04 -89.69 -0.81 8.38 16 26 H 0.05 1.86 7.86 -2.39 -0.02 1.85 16 27 H 0.06 2.66 5.87 -2.39 -0.01 2.65 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.39 7.90 -2.39 -0.02 1.37 16 32 H 0.05 1.92 5.98 -2.39 -0.01 1.91 16 33 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 34 H 0.04 1.62 8.02 -2.38 -0.02 1.60 16 Total: -1.00 -59.65 273.99 2.91 -56.75 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.54 Total: 24.50 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 2.60 Total: -46.23 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.18 Total: -80.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -59.65 2.91 -56.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238425638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.538 kcal (2) G-P(sol) polarization free energy of solvation -59.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds