Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46993 * 2 1 4 4 C 1.50700 * 109.46945 * 240.00150 * 2 1 3 5 5 H 1.08000 * 120.00004 * 240.00387 * 4 2 1 6 6 C 1.37879 * 120.00299 * 59.99485 * 4 2 1 7 7 N 1.31518 * 119.99790 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00379 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47210 * 90.00204 * 8 6 4 10 10 H 1.48498 * 109.47386 * 210.00350 * 8 6 4 11 11 H 1.48497 * 109.46962 * 330.00197 * 8 6 4 12 12 N 1.46891 * 109.47145 * 119.99979 * 2 1 3 13 13 C 1.46904 * 111.00294 * 58.95364 * 12 2 1 14 14 C 1.46902 * 111.00371 * 294.99607 * 12 2 1 15 15 H 1.09002 * 109.46719 * 60.00237 * 14 12 2 16 16 C 1.52997 * 109.47094 * 300.00463 * 14 12 2 17 17 C 1.52992 * 109.47181 * 180.02562 * 14 12 2 18 18 C 1.53009 * 117.50103 * 248.74697 * 17 14 12 19 19 C 1.53005 * 117.50008 * 180.08849 * 17 14 12 20 20 H 1.09002 * 109.46716 * 299.99770 * 1 2 3 21 21 H 1.08998 * 109.47515 * 59.99662 * 1 2 3 22 22 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 23 23 H 0.96995 * 120.00175 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46959 * 296.04481 * 13 12 2 25 25 H 1.09004 * 109.46998 * 56.04312 * 13 12 2 26 26 H 1.09000 * 109.47411 * 176.04522 * 13 12 2 27 27 H 1.09002 * 109.47153 * 299.99508 * 16 14 12 28 28 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 29 29 H 1.09004 * 109.47261 * 59.99681 * 16 14 12 30 30 H 1.09002 * 115.55450 * 34.41954 * 17 14 12 31 31 H 1.09000 * 117.49878 * 0.02562 * 18 17 14 32 32 H 1.08997 * 117.49785 * 145.02207 * 18 17 14 33 33 H 1.08992 * 117.50188 * 214.98232 * 19 17 14 34 34 H 1.09002 * 117.49639 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4863 -0.1414 -5.1124 11 1 3.6291 -1.7583 -3.7123 12 7 2.0197 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 1 0.5633 0.1177 2.4785 16 6 2.2600 1.4412 2.3771 17 6 2.1755 -0.7106 3.6432 18 6 1.1465 -1.3661 4.5666 19 6 1.8883 -0.1059 5.0190 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7093 1.1618 -3.4844 24 1 0.4420 -2.0731 1.3348 25 1 1.8167 -2.5950 0.3318 26 1 1.9618 -2.5869 2.1058 27 1 3.3455 1.3627 2.3166 28 1 1.9845 1.9842 3.2811 29 1 1.8852 1.9756 1.5041 30 1 3.1281 -1.2226 3.5075 31 1 0.0944 -1.2635 4.3010 32 1 1.4224 -2.3091 5.0386 33 1 2.6518 -0.2203 5.7884 34 1 1.3245 0.8265 5.0512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252440263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 26.838267 kcal Electronic energy + Delta-G solvation = -13244.823935 eV Core-core repulsion = 11178.638334 eV Total energy + Delta-G solvation = -2066.185601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.50080 -35.82721 -32.61254 -30.10963 -28.57879 -25.20320 -24.23168 -23.39101 -22.05852 -20.12717 -18.43684 -16.24640 -15.60274 -14.99899 -14.28128 -13.89085 -13.43617 -13.02660 -12.79369 -11.96120 -11.63346 -11.41104 -11.18775 -11.14754 -11.02800 -10.83414 -10.66573 -10.52636 -10.29692 -10.06505 -9.95363 -9.59886 -9.42013 -8.77151 -8.32447 -7.03172 -5.96906 -3.99836 3.33061 3.39596 3.43907 4.08420 4.44611 4.85658 5.14226 5.22194 5.34666 5.43179 5.79523 5.81992 5.91362 6.06495 6.10369 6.20520 6.31489 6.37365 6.48154 6.60855 6.69377 6.75034 6.85343 6.92495 6.96943 7.21285 7.59235 7.77771 7.90210 8.21858 8.46896 8.69328 9.06529 9.64739 11.10326 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.061015 B = 0.009289 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.793515 B = 3013.464457 C = 3159.407062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.207 3.793 3 H 0.046 0.954 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.037 3.963 14 C 0.108 3.892 15 H 0.033 0.967 16 C -0.139 4.139 17 C -0.130 4.130 18 C -0.187 4.187 19 C -0.183 4.183 20 H 0.007 0.993 21 H 0.087 0.913 22 H 0.028 0.972 23 H 0.259 0.741 24 H 0.012 0.988 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -1.849 10.217 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.101 3.899 3 H 0.063 0.937 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.111 4.111 14 C -0.001 4.001 15 H 0.051 0.949 16 C -0.197 4.197 17 C -0.149 4.149 18 C -0.224 4.224 19 C -0.220 4.220 20 H 0.025 0.975 21 H 0.105 0.895 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.815 -1.742 10.037 10.220 hybrid contribution -0.719 -0.445 -0.818 1.177 sum 0.096 -2.187 9.219 9.475 Atomic orbital electron populations 1.22393 1.01164 0.99239 1.00341 1.19360 0.89553 0.95032 0.85982 0.93673 1.21152 1.30350 1.12353 0.89767 0.91999 1.24929 0.95336 0.95159 0.98961 1.69888 1.37263 1.23085 1.23285 0.86540 0.79223 0.79273 0.82622 1.20896 1.21334 1.19878 1.62373 1.59409 1.01796 1.01790 1.22182 0.96627 0.91269 1.01032 1.21105 0.96288 0.93326 0.89398 0.94931 1.21801 1.01574 0.95497 1.00814 1.22375 0.99900 1.02191 0.90430 1.22996 0.97906 0.96489 1.04983 1.22908 1.03555 0.97272 0.98278 0.97451 0.89467 0.95254 0.93092 0.96903 0.91081 0.93788 0.92241 0.93624 0.91885 0.87520 0.89315 0.89395 0.89313 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.27 37.16 0.31 -3.95 16 2 C 0.21 5.24 2.08 -68.87 -0.14 5.10 16 3 H 0.05 1.24 6.05 -51.93 -0.31 0.93 16 4 C -0.50 -13.75 7.88 -34.44 -0.27 -14.02 16 5 H 0.06 1.72 6.77 -52.49 -0.36 1.36 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.59 4.61 -228.30 -1.05 -12.64 16 13 C 0.04 0.76 8.49 60.07 0.51 1.27 16 14 C 0.11 2.01 2.01 -67.72 -0.14 1.87 16 15 H 0.03 0.65 6.20 -51.93 -0.32 0.32 16 16 C -0.14 -2.48 8.81 37.16 0.33 -2.15 16 17 C -0.13 -2.03 3.76 -90.62 -0.34 -2.37 16 18 C -0.19 -2.53 10.16 -26.69 -0.27 -2.80 16 19 C -0.18 -2.36 9.74 -26.69 -0.26 -2.62 16 20 H 0.01 0.15 6.52 -51.93 -0.34 -0.19 16 21 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 22 H 0.03 0.70 6.48 -51.93 -0.34 0.37 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.01 0.26 6.51 -51.93 -0.34 -0.08 16 25 H 0.07 1.54 6.41 -51.93 -0.33 1.21 16 26 H 0.04 0.78 6.91 -51.93 -0.36 0.42 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.69 7.29 -51.93 -0.38 0.31 16 29 H 0.06 1.24 6.30 -51.93 -0.33 0.91 16 30 H 0.11 1.72 8.07 -51.93 -0.42 1.30 16 31 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.14 7.61 -51.93 -0.40 0.75 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -28.05 261.28 -7.23 -35.28 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.35 Total: 0.16 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -0.37 Total: -18.18 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.42 Total: -37.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.05 -7.23 -35.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.121 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds