Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46993 * 2 1 4 4 C 1.50700 * 109.46945 * 240.00150 * 2 1 3 5 5 H 1.08000 * 120.00004 * 240.00387 * 4 2 1 6 6 C 1.37879 * 120.00299 * 59.99485 * 4 2 1 7 7 N 1.31518 * 119.99790 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00379 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47210 * 90.00204 * 8 6 4 10 10 H 1.48498 * 109.47386 * 210.00350 * 8 6 4 11 11 H 1.48497 * 109.46962 * 330.00197 * 8 6 4 12 12 N 1.46891 * 109.47145 * 119.99979 * 2 1 3 13 13 C 1.46904 * 111.00294 * 58.95364 * 12 2 1 14 14 C 1.46902 * 111.00371 * 294.99607 * 12 2 1 15 15 H 1.09002 * 109.46719 * 60.00237 * 14 12 2 16 16 C 1.52997 * 109.47094 * 300.00463 * 14 12 2 17 17 C 1.52992 * 109.47181 * 180.02562 * 14 12 2 18 18 C 1.53009 * 117.50103 * 248.74697 * 17 14 12 19 19 C 1.53005 * 117.50008 * 180.08849 * 17 14 12 20 20 H 1.09002 * 109.46716 * 299.99770 * 1 2 3 21 21 H 1.08998 * 109.47515 * 59.99662 * 1 2 3 22 22 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 23 23 H 0.96995 * 120.00175 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46959 * 296.04481 * 13 12 2 25 25 H 1.09004 * 109.46998 * 56.04312 * 13 12 2 26 26 H 1.09000 * 109.47411 * 176.04522 * 13 12 2 27 27 H 1.09002 * 109.47153 * 299.99508 * 16 14 12 28 28 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 29 29 H 1.09004 * 109.47261 * 59.99681 * 16 14 12 30 30 H 1.09002 * 115.55450 * 34.41954 * 17 14 12 31 31 H 1.09000 * 117.49878 * 0.02562 * 18 17 14 32 32 H 1.08997 * 117.49785 * 145.02207 * 18 17 14 33 33 H 1.08992 * 117.50188 * 214.98232 * 19 17 14 34 34 H 1.09002 * 117.49639 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4863 -0.1414 -5.1124 11 1 3.6291 -1.7583 -3.7123 12 7 2.0197 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 1 0.5633 0.1177 2.4785 16 6 2.2600 1.4412 2.3771 17 6 2.1755 -0.7106 3.6432 18 6 1.1465 -1.3661 4.5666 19 6 1.8883 -0.1059 5.0190 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7093 1.1618 -3.4844 24 1 0.4420 -2.0731 1.3348 25 1 1.8167 -2.5950 0.3318 26 1 1.9618 -2.5869 2.1058 27 1 3.3455 1.3627 2.3166 28 1 1.9845 1.9842 3.2811 29 1 1.8852 1.9756 1.5041 30 1 3.1281 -1.2226 3.5075 31 1 0.0944 -1.2635 4.3010 32 1 1.4224 -2.3091 5.0386 33 1 2.6518 -0.2203 5.7884 34 1 1.3245 0.8265 5.0512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252440263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = 10.038473 kcal Electronic energy + Delta-G solvation = -13245.552429 eV Core-core repulsion = 11178.638334 eV Total energy + Delta-G solvation = -2066.914095 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99525 -37.31645 -34.59419 -31.68484 -30.46697 -27.30883 -25.92880 -24.88086 -23.09206 -21.74799 -20.03221 -18.26121 -17.16498 -16.73934 -15.90777 -15.38446 -15.07061 -14.69269 -14.45549 -13.69816 -13.19209 -13.05933 -12.99077 -12.80482 -12.62012 -12.38771 -12.34194 -12.26822 -11.98466 -11.92108 -11.45610 -11.05357 -10.82443 -10.69716 -10.43562 -8.78567 -8.09293 -6.19430 1.42245 1.43135 1.53914 2.43730 2.97396 3.19725 3.38933 3.90670 4.11353 4.19474 4.40748 4.50354 4.65715 4.66566 4.74968 4.81354 4.86363 4.91434 4.96492 5.04547 5.12291 5.21743 5.28089 5.31651 5.34392 5.43470 5.59874 5.74880 5.83434 6.24700 6.54668 6.83687 6.95425 7.49524 8.96998 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.061015 B = 0.009289 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.793515 B = 3013.464457 C = 3159.407062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.212 3.788 3 H 0.018 0.982 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.540 5.540 13 C 0.045 3.955 14 C 0.108 3.892 15 H 0.022 0.978 16 C -0.134 4.134 17 C -0.151 4.151 18 C -0.179 4.179 19 C -0.162 4.162 20 H 0.022 0.978 21 H 0.060 0.940 22 H 0.027 0.973 23 H 0.260 0.740 24 H 0.010 0.990 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -2.630 11.564 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.104 3.896 3 H 0.035 0.965 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.263 5.263 13 C -0.104 4.104 14 C -0.001 4.001 15 H 0.040 0.960 16 C -0.192 4.192 17 C -0.170 4.170 18 C -0.216 4.216 19 C -0.199 4.199 20 H 0.040 0.960 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.174 -2.530 11.402 11.738 hybrid contribution -0.833 -0.180 -1.174 1.451 sum 0.340 -2.710 10.228 10.586 Atomic orbital electron populations 1.22186 1.00909 0.98830 0.99696 1.19107 0.89581 0.93717 0.87150 0.96459 1.21430 1.30433 1.12356 0.91073 0.92608 1.25697 0.95508 0.95849 1.01827 1.70016 1.38069 1.24207 1.23912 0.85548 0.78793 0.78228 0.79004 1.20239 1.20949 1.19434 1.62287 1.59608 1.02520 1.01934 1.22125 0.96507 0.90463 1.01271 1.21160 0.95760 0.93800 0.89332 0.96038 1.21761 1.01161 0.95292 1.00972 1.22163 1.00449 1.04023 0.90315 1.23069 0.97104 0.97779 1.03682 1.23014 1.03372 0.97167 0.96391 0.95956 0.92118 0.95354 0.93050 0.97201 0.92977 0.90985 0.92551 0.90647 0.94689 0.87913 0.89830 0.87567 0.87109 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.27 71.98 0.60 -7.28 16 2 C 0.21 10.94 2.08 44.17 0.09 11.03 16 3 H 0.02 1.00 6.05 -2.39 -0.01 0.99 16 4 C -0.51 -28.84 7.88 25.60 0.20 -28.64 16 5 H 0.06 3.13 6.77 -2.91 -0.02 3.11 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.54 -23.56 4.61 -876.21 -4.04 -27.60 16 13 C 0.04 1.78 8.49 127.69 1.08 2.87 16 14 C 0.11 3.92 2.01 44.91 0.09 4.01 16 15 H 0.02 0.84 6.20 -2.39 -0.01 0.82 16 16 C -0.13 -4.71 8.81 71.98 0.63 -4.07 16 17 C -0.15 -4.35 3.76 -10.79 -0.04 -4.39 16 18 C -0.18 -4.28 10.16 30.62 0.31 -3.97 16 19 C -0.16 -3.60 9.74 30.62 0.30 -3.30 16 20 H 0.02 1.00 6.52 -2.39 -0.02 0.99 16 21 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 22 H 0.03 1.37 6.48 -2.39 -0.02 1.36 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.01 0.38 6.51 -2.39 -0.02 0.37 16 25 H 0.05 2.25 6.41 -2.38 -0.02 2.23 16 26 H 0.07 2.44 6.91 -2.39 -0.02 2.42 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.14 7.29 -2.39 -0.02 2.12 16 29 H 0.03 1.39 6.30 -2.38 -0.02 1.38 16 30 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 31 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.05 7.61 -2.39 -0.02 2.03 16 Total: -1.00 -59.90 261.28 3.01 -56.89 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.06 Total: 10.62 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.72 Total: -32.77 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.80 Total: -81.16 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.90 3.01 -56.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.927 kcal (2) G-P(sol) polarization free energy of solvation -59.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds