Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00018 * 2 1 4 4 H 1.09005 * 109.46712 * 13.63314 * 3 2 1 5 5 C 1.50694 * 109.46903 * 133.63001 * 3 2 1 6 6 H 1.08001 * 119.99824 * 119.99937 * 5 3 2 7 7 C 1.37879 * 120.00522 * 299.99897 * 5 3 2 8 8 N 1.31516 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00184 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47141 * 60.00294 * 9 7 5 11 11 H 1.48502 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47471 * 299.99993 * 9 7 5 13 13 C 1.53000 * 109.47026 * 253.63345 * 3 2 1 14 14 C 1.52995 * 109.47156 * 60.22940 * 13 3 2 15 15 C 1.53002 * 109.46713 * 179.97438 * 14 13 3 16 16 C 1.53001 * 109.47164 * 60.00608 * 15 14 13 17 17 C 1.52998 * 109.46853 * 299.99882 * 16 15 14 18 18 C 1.53000 * 109.47582 * 59.99808 * 17 16 15 19 19 H 1.08997 * 109.47204 * 174.69651 * 1 2 3 20 20 H 1.09009 * 109.46885 * 294.69296 * 1 2 3 21 21 H 1.09000 * 109.47200 * 54.68571 * 1 2 3 22 22 H 1.00899 * 110.99732 * 236.04632 * 2 1 3 23 23 H 0.96997 * 120.00400 * 180.02562 * 8 7 5 24 24 H 1.09004 * 109.46653 * 180.23327 * 13 3 2 25 25 H 1.08998 * 109.47302 * 60.00506 * 14 13 3 26 26 H 1.08994 * 109.47755 * 299.99924 * 14 13 3 27 27 H 1.09005 * 109.47151 * 179.97438 * 15 14 13 28 28 H 1.08993 * 109.47738 * 300.00041 * 15 14 13 29 29 H 1.09005 * 109.47011 * 59.99415 * 16 15 14 30 30 H 1.08993 * 109.47552 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.46931 * 299.99582 * 17 16 15 32 32 H 1.08997 * 109.47233 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47121 * 180.02562 * 18 17 16 34 34 H 1.08994 * 109.46727 * 59.99761 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1932 2.0685 0.2422 5 6 3.0907 1.4890 1.0284 6 1 4.0881 1.7712 0.7251 7 6 2.8196 1.2364 2.3564 8 7 1.6051 0.8923 2.7256 9 14 4.1774 1.3815 3.6310 10 1 4.7102 2.7676 3.6311 11 1 3.6317 1.0603 4.9742 12 1 5.2698 0.4313 3.3009 13 6 2.5577 1.7019 -1.3841 14 6 1.4444 1.5880 -2.4273 15 6 2.0066 1.9191 -3.8112 16 6 3.1289 0.9374 -4.1540 17 6 4.2422 1.0511 -3.1107 18 6 3.6801 0.7202 -1.7267 19 1 -0.3633 -1.0232 -0.0950 20 1 -0.3633 0.4294 0.9338 21 1 -0.3633 0.5940 -0.8386 22 1 1.8306 -0.5261 -0.7814 23 1 1.4141 0.7149 3.6599 24 1 2.9521 2.7181 -1.3828 25 1 0.6450 2.2877 -2.1834 26 1 1.0500 0.5719 -2.4285 27 1 1.2135 1.8376 -4.5546 28 1 2.4006 2.9353 -3.8098 29 1 2.7348 -0.0789 -4.1554 30 1 3.5292 1.1729 -5.1400 31 1 4.6364 2.0674 -3.1093 32 1 5.0420 0.3521 -3.3551 33 1 4.4732 0.8017 -0.9834 34 1 3.2860 -0.2961 -1.7282 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259096639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -22.463199 kcal Electronic energy + Delta-G solvation = -13424.650472 eV Core-core repulsion = 11356.326999 eV Total energy + Delta-G solvation = -2068.323473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.50951 -34.75861 -31.83663 -30.32537 -30.04132 -26.52169 -23.64778 -22.57962 -21.83012 -20.15597 -18.52939 -16.18383 -15.12466 -14.34579 -14.21192 -13.84556 -13.64198 -12.90649 -12.80705 -12.23268 -11.74649 -11.72434 -11.56853 -10.99201 -10.88868 -10.72670 -10.65781 -10.47322 -10.38645 -9.97054 -9.72480 -9.53399 -9.00392 -8.76796 -8.23677 -6.59390 -5.74886 -3.83173 3.42639 3.47056 3.49697 4.59218 5.16466 5.26552 5.27526 5.45524 5.75260 5.84573 5.99399 6.02501 6.04606 6.10881 6.13039 6.18268 6.39428 6.49429 6.56260 6.57476 6.61583 6.70081 6.79501 7.04936 7.16924 7.19544 7.24878 7.47787 8.08789 8.48701 8.80923 8.93118 9.34467 9.83084 11.31852 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042066 B = 0.011778 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.462505 B = 2376.842866 C = 2819.939283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.657 5.657 3 C 0.224 3.776 4 H 0.023 0.977 5 C -0.514 4.514 6 H 0.052 0.948 7 C 0.082 3.918 8 N -0.863 5.863 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.102 4.102 19 H 0.031 0.969 20 H 0.069 0.931 21 H -0.009 1.009 22 H 0.303 0.697 23 H 0.253 0.747 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 0.193 -10.167 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.288 5.288 3 C 0.117 3.883 4 H 0.041 0.959 5 C -0.553 4.553 6 H 0.070 0.930 7 C -0.123 4.123 8 N -0.499 5.499 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.123 4.123 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.140 4.140 19 H 0.050 0.950 20 H 0.087 0.913 21 H 0.009 0.991 22 H 0.121 0.879 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.753 0.071 -9.317 9.347 hybrid contribution 0.470 0.274 -0.134 0.560 sum 1.223 0.345 -9.451 9.536 Atomic orbital electron populations 1.22134 0.91343 0.97876 0.99540 1.60951 1.04368 1.17011 1.46445 1.19186 0.94507 0.85885 0.88714 0.95870 1.20987 0.95552 1.47265 0.91458 0.93002 1.24887 0.94745 0.94483 0.98159 1.69987 1.19154 1.45075 1.15734 0.86890 0.82930 0.78148 0.81117 1.20686 1.21643 1.20497 1.21763 0.94646 0.98982 0.96935 1.21687 0.98518 1.00794 0.94422 1.21528 0.97482 0.99099 0.97310 1.21509 0.96512 0.99424 0.97907 1.21607 0.97102 1.00864 0.96279 1.21466 0.98897 0.98952 0.94684 0.94964 0.91260 0.99082 0.87915 0.93720 0.92295 0.92972 0.92684 0.93180 0.92514 0.92471 0.93149 0.92671 0.93011 0.90919 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 9.96 60.07 0.60 1.50 16 2 N -0.66 -15.60 5.68 -115.24 -0.66 -16.26 16 3 C 0.22 5.50 1.82 -68.87 -0.13 5.38 16 4 H 0.02 0.64 7.60 -51.93 -0.39 0.25 16 5 C -0.51 -14.06 8.03 -34.44 -0.28 -14.34 16 6 H 0.05 1.40 6.72 -52.49 -0.35 1.05 16 7 C 0.08 2.30 5.39 -17.82 -0.10 2.21 16 8 N -0.86 -25.19 12.56 55.43 0.70 -24.49 16 9 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C -0.10 -2.07 1.95 -90.62 -0.18 -2.25 16 14 C -0.12 -2.02 4.10 -26.73 -0.11 -2.13 16 15 C -0.12 -1.70 5.92 -26.73 -0.16 -1.85 16 16 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 17 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 16 18 C -0.10 -1.90 4.76 -26.73 -0.13 -2.03 16 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.07 1.69 7.94 -51.92 -0.41 1.28 16 21 H -0.01 -0.18 6.66 -51.93 -0.35 -0.53 16 22 H 0.30 6.60 5.55 -39.29 -0.22 6.38 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.97 6.31 -51.93 -0.33 0.64 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.49 6.63 -51.93 -0.34 1.15 16 34 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -28.42 258.18 -7.54 -35.96 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.66 Total: 1.48 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -0.79 Total: -17.27 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.04 Total: -40.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.42 -7.54 -35.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.499 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds