Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00018 * 2 1 4 4 H 1.09005 * 109.46712 * 13.63314 * 3 2 1 5 5 C 1.50694 * 109.46903 * 133.63001 * 3 2 1 6 6 H 1.08001 * 119.99824 * 119.99937 * 5 3 2 7 7 C 1.37879 * 120.00522 * 299.99897 * 5 3 2 8 8 N 1.31516 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00184 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47141 * 60.00294 * 9 7 5 11 11 H 1.48502 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47471 * 299.99993 * 9 7 5 13 13 C 1.53000 * 109.47026 * 253.63345 * 3 2 1 14 14 C 1.52995 * 109.47156 * 60.22940 * 13 3 2 15 15 C 1.53002 * 109.46713 * 179.97438 * 14 13 3 16 16 C 1.53001 * 109.47164 * 60.00608 * 15 14 13 17 17 C 1.52998 * 109.46853 * 299.99882 * 16 15 14 18 18 C 1.53000 * 109.47582 * 59.99808 * 17 16 15 19 19 H 1.08997 * 109.47204 * 174.69651 * 1 2 3 20 20 H 1.09009 * 109.46885 * 294.69296 * 1 2 3 21 21 H 1.09000 * 109.47200 * 54.68571 * 1 2 3 22 22 H 1.00899 * 110.99732 * 236.04632 * 2 1 3 23 23 H 0.96997 * 120.00400 * 180.02562 * 8 7 5 24 24 H 1.09004 * 109.46653 * 180.23327 * 13 3 2 25 25 H 1.08998 * 109.47302 * 60.00506 * 14 13 3 26 26 H 1.08994 * 109.47755 * 299.99924 * 14 13 3 27 27 H 1.09005 * 109.47151 * 179.97438 * 15 14 13 28 28 H 1.08993 * 109.47738 * 300.00041 * 15 14 13 29 29 H 1.09005 * 109.47011 * 59.99415 * 16 15 14 30 30 H 1.08993 * 109.47552 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.46931 * 299.99582 * 17 16 15 32 32 H 1.08997 * 109.47233 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47121 * 180.02562 * 18 17 16 34 34 H 1.08994 * 109.46727 * 59.99761 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1932 2.0685 0.2422 5 6 3.0907 1.4890 1.0284 6 1 4.0881 1.7712 0.7251 7 6 2.8196 1.2364 2.3564 8 7 1.6051 0.8923 2.7256 9 14 4.1774 1.3815 3.6310 10 1 4.7102 2.7676 3.6311 11 1 3.6317 1.0603 4.9742 12 1 5.2698 0.4313 3.3009 13 6 2.5577 1.7019 -1.3841 14 6 1.4444 1.5880 -2.4273 15 6 2.0066 1.9191 -3.8112 16 6 3.1289 0.9374 -4.1540 17 6 4.2422 1.0511 -3.1107 18 6 3.6801 0.7202 -1.7267 19 1 -0.3633 -1.0232 -0.0950 20 1 -0.3633 0.4294 0.9338 21 1 -0.3633 0.5940 -0.8386 22 1 1.8306 -0.5261 -0.7814 23 1 1.4141 0.7149 3.6599 24 1 2.9521 2.7181 -1.3828 25 1 0.6450 2.2877 -2.1834 26 1 1.0500 0.5719 -2.4285 27 1 1.2135 1.8376 -4.5546 28 1 2.4006 2.9353 -3.8098 29 1 2.7348 -0.0789 -4.1554 30 1 3.5292 1.1729 -5.1400 31 1 4.6364 2.0674 -3.1093 32 1 5.0420 0.3521 -3.3551 33 1 4.4732 0.8017 -0.9834 34 1 3.2860 -0.2961 -1.7282 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259096639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = -39.734049 kcal Electronic energy + Delta-G solvation = -13425.399392 eV Core-core repulsion = 11356.326999 eV Total energy + Delta-G solvation = -2069.072393 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02666 -36.42763 -33.93282 -31.82758 -31.45804 -28.37553 -25.57547 -24.22289 -23.22996 -21.62143 -20.09102 -18.27940 -16.76830 -16.17639 -15.89549 -15.19011 -14.97492 -14.73148 -14.46055 -13.83467 -13.54557 -13.31049 -12.98487 -12.78845 -12.61635 -12.50679 -12.44920 -11.90883 -11.79162 -11.67316 -11.32659 -11.06707 -10.64668 -10.57652 -10.36616 -8.48591 -7.88021 -6.03814 1.44742 1.46260 1.52377 2.52509 3.33069 3.92056 3.99897 4.03784 4.19964 4.45751 4.48616 4.67197 4.69161 4.75429 4.76183 4.76435 4.89920 4.91433 5.19390 5.23635 5.25648 5.33585 5.36193 5.38831 5.50716 5.53732 5.66495 5.72915 5.93418 6.43394 6.76787 7.06114 7.38392 7.66053 9.15503 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042066 B = 0.011778 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.462505 B = 2376.842866 C = 2819.939283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.673 5.673 3 C 0.226 3.774 4 H -0.015 1.015 5 C -0.527 4.527 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.891 5.891 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.097 4.097 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.096 4.096 19 H 0.054 0.946 20 H 0.036 0.964 21 H 0.008 0.992 22 H 0.315 0.685 23 H 0.250 0.750 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -0.149 -11.946 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.305 5.305 3 C 0.118 3.882 4 H 0.002 0.998 5 C -0.566 4.566 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.529 5.529 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.201 1.201 13 C -0.117 4.117 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.134 4.134 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.026 0.974 22 H 0.134 0.866 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.511 -0.268 -11.110 11.215 hybrid contribution 0.216 0.393 0.422 0.616 sum 1.727 0.126 -10.688 10.827 Atomic orbital electron populations 1.21985 0.90228 0.99255 0.98510 1.60718 1.05611 1.16700 1.47450 1.19003 0.92705 0.85605 0.90855 0.99756 1.21384 0.96131 1.46575 0.92491 0.93283 1.25614 0.96764 0.94575 1.00161 1.70133 1.20734 1.46304 1.15759 0.85914 0.80334 0.78282 0.78636 1.20029 1.21608 1.20118 1.21593 0.96067 0.98664 0.95365 1.21595 0.97206 1.00508 0.95498 1.21508 0.98430 0.99478 0.95559 1.21505 0.95526 0.99409 0.98548 1.21560 0.98082 1.01375 0.94304 1.21360 0.97432 0.98211 0.96423 0.92712 0.94490 0.97367 0.86580 0.94093 0.93485 0.93934 0.92785 0.90984 0.92293 0.92089 0.90450 0.92541 0.91307 0.93592 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.20 9.96 127.69 1.27 3.47 16 2 N -0.67 -32.13 5.68 -518.51 -2.95 -35.08 16 3 C 0.23 11.32 1.82 44.17 0.08 11.40 16 4 H -0.02 -0.88 7.60 -2.38 -0.02 -0.90 16 5 C -0.53 -29.39 8.03 25.60 0.21 -29.19 16 6 H 0.05 2.70 6.72 -2.91 -0.02 2.68 16 7 C 0.03 1.73 5.39 84.65 0.46 2.19 16 8 N -0.89 -53.21 12.56 21.45 0.27 -52.94 16 9 Si 0.94 45.12 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C -0.10 -3.87 1.95 -10.79 -0.02 -3.89 16 14 C -0.11 -3.68 4.10 30.59 0.13 -3.55 16 15 C -0.11 -2.91 5.92 30.60 0.18 -2.73 16 16 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 17 C -0.12 -3.20 5.92 30.59 0.18 -3.02 16 18 C -0.10 -3.49 4.76 30.60 0.15 -3.35 16 19 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 20 H 0.04 1.84 7.94 -2.38 -0.02 1.82 16 21 H 0.01 0.32 6.66 -2.39 -0.02 0.31 16 22 H 0.32 13.55 5.55 -89.69 -0.50 13.05 16 23 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.88 6.63 -2.39 -0.02 1.87 16 34 H 0.05 1.92 6.29 -2.39 -0.02 1.91 16 Total: -1.00 -61.33 258.18 2.72 -58.61 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.56 Total: 13.41 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.81 Total: -31.15 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.68 Total: -88.02 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.33 2.72 -58.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.877 kcal (2) G-P(sol) polarization free energy of solvation -61.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds