Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47069 * 2 1 4 4 C 1.47845 * 110.99839 * 69.87569 * 3 2 1 5 5 C 1.54907 * 104.79706 * 146.36299 * 4 3 2 6 6 H 1.09000 * 110.98857 * 81.01817 * 5 4 3 7 7 C 1.50702 * 110.99062 * 204.79708 * 5 4 3 8 8 H 1.08001 * 119.99795 * 118.54208 * 7 5 4 9 9 C 1.37875 * 120.00129 * 298.54768 * 7 5 4 10 10 N 1.31510 * 120.00302 * 179.97438 * 9 7 5 11 11 Si 1.86802 * 119.99981 * 359.97438 * 9 7 5 12 12 H 1.48504 * 109.47176 * 90.00114 * 11 9 7 13 13 H 1.48501 * 109.47223 * 210.00039 * 11 9 7 14 14 H 1.48500 * 109.47076 * 330.00433 * 11 9 7 15 15 C 1.55138 * 101.65241 * 322.92886 * 5 4 3 16 16 C 1.47443 * 110.99956 * 190.71503 * 3 2 1 17 17 C 1.52997 * 109.88766 * 117.33985 * 16 3 2 18 18 C 1.53000 * 110.02304 * 356.22216 * 16 3 2 19 19 H 1.09005 * 109.46949 * 60.00060 * 1 2 3 20 20 H 1.08999 * 109.46995 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47345 * 300.00083 * 1 2 3 22 22 H 1.09002 * 109.47345 * 239.99917 * 2 1 3 23 23 H 1.09005 * 109.46949 * 119.99940 * 2 1 3 24 24 H 1.09000 * 110.37743 * 27.52600 * 4 3 2 25 25 H 1.09007 * 110.37094 * 265.19448 * 4 3 2 26 26 H 0.96996 * 120.00395 * 180.02562 * 10 9 7 27 27 H 1.08989 * 110.70740 * 154.04027 * 15 5 4 28 28 H 1.09005 * 110.70127 * 277.27258 * 15 5 4 29 29 H 1.09003 * 109.46884 * 177.77709 * 17 16 3 30 30 H 1.09007 * 109.46983 * 297.76691 * 17 16 3 31 31 H 1.08999 * 109.47434 * 57.77019 * 17 16 3 32 32 H 1.08993 * 109.47534 * 302.15110 * 18 16 3 33 33 H 1.09003 * 109.47019 * 62.15204 * 18 16 3 34 34 H 1.08998 * 109.47316 * 182.14859 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7485 2.0428 1.2960 5 6 2.9433 3.0055 1.5087 6 1 2.8041 3.9302 0.9487 7 6 3.1524 3.2910 2.9736 8 1 4.0815 3.0152 3.4502 9 6 2.1576 3.9042 3.7053 10 7 2.3398 4.1529 4.9837 11 14 0.5509 4.3816 2.8807 12 1 -0.4116 3.2553 2.9824 13 1 -0.0146 5.5783 3.5540 14 1 0.8015 4.6908 1.4500 15 6 4.1202 2.1769 0.9296 16 6 3.4709 1.4323 -0.2559 17 6 3.7454 2.1874 -1.5580 18 6 4.0330 0.0124 -0.3494 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.7096 1.3035 2.0960 25 1 0.8141 2.6022 1.2495 26 1 1.6399 4.5839 5.4986 27 1 4.9187 2.8324 0.5823 28 1 4.4949 1.4701 1.6700 29 1 4.8214 2.2526 -1.7202 30 1 3.2841 1.6559 -2.3904 31 1 3.3265 3.1914 -1.4911 32 1 3.8178 -0.5251 0.5741 33 1 3.5701 -0.5071 -1.1884 34 1 5.1115 0.0577 -0.5005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259162174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -21.502741 kcal Electronic energy + Delta-G solvation = -13522.637797 eV Core-core repulsion = 11454.355973 eV Total energy + Delta-G solvation = -2068.281824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76991 -35.48306 -34.29893 -33.10347 -29.88779 -28.27584 -27.22183 -25.63663 -23.00334 -21.50204 -19.76499 -18.66760 -17.12581 -16.39404 -15.99763 -15.68998 -14.91832 -14.71986 -14.48372 -14.10827 -13.74580 -13.25172 -13.11079 -12.91815 -12.71083 -12.35868 -12.22937 -12.11884 -12.03374 -11.86102 -11.56835 -11.33271 -11.13892 -11.03597 -10.76309 -9.18200 -8.34501 -6.38399 1.28560 1.32433 1.44063 2.29351 2.99070 3.09330 3.80239 4.01357 4.11658 4.28206 4.36381 4.42383 4.54486 4.65264 4.67863 4.78461 4.83295 4.89617 4.95438 4.97705 5.03939 5.14643 5.19983 5.29603 5.30466 5.34810 5.48585 5.61443 5.67572 6.12093 6.27582 6.39427 6.68200 7.27392 8.82259 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.013906 C = 0.011767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.193260 B = 2013.097913 C = 2378.957515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 N -0.529 5.529 4 C 0.049 3.951 5 C 0.003 3.997 6 H 0.031 0.969 7 C -0.515 4.515 8 H 0.034 0.966 9 C 0.018 3.982 10 N -0.947 5.947 11 Si 0.940 3.060 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.248 1.248 15 C -0.113 4.113 16 C 0.086 3.914 17 C -0.118 4.118 18 C -0.152 4.152 19 H 0.063 0.937 20 H 0.078 0.922 21 H 0.030 0.970 22 H 0.099 0.901 23 H 0.025 0.975 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -8.041 -13.576 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.253 5.253 4 C -0.079 4.079 5 C -0.016 4.016 6 H 0.049 0.951 7 C -0.554 4.554 8 H 0.052 0.948 9 C -0.180 4.180 10 N -0.587 5.587 11 Si 0.766 3.234 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.172 1.172 15 C -0.151 4.151 16 C -0.003 4.003 17 C -0.175 4.175 18 C -0.210 4.210 19 H 0.082 0.918 20 H 0.097 0.903 21 H 0.049 0.951 22 H 0.117 0.883 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.593 -7.728 -13.832 15.925 hybrid contribution -0.287 0.117 1.302 1.339 sum -1.881 -7.612 -12.530 14.781 Atomic orbital electron populations 1.21778 0.94931 1.02173 1.01426 1.22452 0.96151 0.89073 1.01130 1.63665 1.14487 1.16758 1.30432 1.23236 0.98754 0.96760 0.89143 1.20174 0.93000 0.94325 0.94103 0.95063 1.21219 1.01603 1.38471 0.94083 0.94751 1.25823 1.02095 0.95015 0.95066 1.70032 1.35633 1.44357 1.08711 0.85948 0.79846 0.77884 0.79746 1.19274 1.21732 1.17236 1.22747 0.97870 0.98235 0.96244 1.21880 0.86600 0.96096 0.95717 1.21676 1.01177 0.99511 0.95181 1.22297 1.01877 0.94959 1.01875 0.91813 0.90299 0.95092 0.88276 0.95708 0.95467 0.93243 0.92426 0.91272 0.93390 0.91224 0.91503 0.93938 0.93604 0.90186 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.97 71.98 0.72 -3.21 16 2 C 0.04 1.16 4.41 86.30 0.38 1.54 16 3 N -0.53 -18.87 4.78 -836.49 -4.00 -22.87 16 4 C 0.05 2.16 4.06 86.77 0.35 2.51 16 5 C 0.00 0.16 2.41 -10.15 -0.02 0.14 16 6 H 0.03 1.55 7.41 -2.39 -0.02 1.53 16 7 C -0.52 -30.16 9.13 25.60 0.23 -29.93 16 8 H 0.03 2.21 8.03 -2.91 -0.02 2.19 16 9 C 0.02 1.04 5.46 84.65 0.46 1.50 16 10 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 11 Si 0.94 46.07 24.50 68.60 1.68 47.75 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.25 -11.58 6.49 99.48 0.65 -10.94 16 15 C -0.11 -4.51 5.45 31.77 0.17 -4.33 16 16 C 0.09 2.79 1.15 3.87 0.00 2.79 16 17 C -0.12 -3.23 8.70 71.98 0.63 -2.61 16 18 C -0.15 -3.93 7.14 71.98 0.51 -3.41 16 19 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.03 0.96 7.52 -2.39 -0.02 0.94 16 22 H 0.10 2.36 6.06 -2.39 -0.01 2.34 16 23 H 0.02 0.77 6.82 -2.38 -0.02 0.76 16 24 H 0.03 1.29 7.50 -2.39 -0.02 1.27 16 25 H 0.05 2.25 4.97 -2.38 -0.01 2.23 16 26 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.07 2.59 7.83 -2.39 -0.02 2.57 16 28 H 0.05 2.02 7.74 -2.38 -0.02 2.00 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.28 6.90 -2.39 -0.02 1.26 16 33 H 0.08 1.70 6.47 -2.39 -0.02 1.68 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.19 256.24 2.40 -62.79 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.98 Total: 7.11 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.44 Total: -35.01 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.70 Total: -82.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.68 Total: 47.75 kcal Total: -65.19 2.40 -62.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259162174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.283 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds