Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4 8 8 C 1.50702 * 109.47332 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00010 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00007 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99727 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46850 * 60.00265 * 12 10 8 14 14 H 1.48506 * 109.46681 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47233 * 299.99635 * 12 10 8 16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 28 28 H 1.09002 * 109.46849 * 300.00072 * 7 6 5 29 29 H 1.09004 * 109.47035 * 59.99259 * 7 6 5 30 30 H 0.97004 * 120.00394 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.50326 * 182.41022 * 16 5 4 32 32 H 1.08996 * 109.53714 * 62.30612 * 16 5 4 33 33 H 1.09005 * 109.46673 * 294.18102 * 17 2 1 34 34 H 1.09003 * 109.46587 * 54.14643 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2487 1.8420 0.9590 8 6 7.7432 1.7513 0.7884 9 1 8.2096 0.7930 0.6135 10 6 8.5152 2.8917 0.8556 11 7 7.9474 4.0585 1.0691 12 14 10.3679 2.7791 0.6448 13 1 10.6804 2.2125 -0.6918 14 1 10.9623 4.1353 0.7583 15 1 10.9336 1.9003 1.6997 16 6 3.5182 -0.8715 1.0210 17 6 1.9952 -0.7707 1.1338 18 1 -0.3634 0.4471 0.9253 19 1 -0.3633 -1.0249 -0.0754 20 1 -0.3633 0.5778 -0.8499 21 1 1.5634 1.9257 -0.8330 22 1 1.7324 1.8608 0.9376 23 1 3.9099 2.3512 -0.1310 24 1 3.7820 0.8572 -1.0905 25 1 3.8886 1.0355 1.9561 26 1 6.0519 -0.2007 1.6142 27 1 5.8648 0.0298 -0.1408 28 1 5.8328 2.4877 0.1856 29 1 6.0198 2.2571 1.9406 30 1 8.4905 4.8608 1.1167 31 1 3.9098 -1.4302 1.8710 32 1 3.7814 -1.3842 0.0959 33 1 1.7324 -0.2708 2.0661 34 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259285745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -27.494179 kcal Electronic energy + Delta-G solvation = -12724.952346 eV Core-core repulsion = 10656.410713 eV Total energy + Delta-G solvation = -2068.541633 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.85738 -34.98586 -32.72838 -30.62354 -29.95299 -26.68191 -24.32843 -22.96131 -21.99584 -20.00475 -19.18535 -16.28313 -15.47827 -14.91533 -14.53495 -14.44416 -13.98043 -13.31714 -12.97740 -12.45525 -12.19269 -12.05791 -11.98131 -11.41835 -11.08579 -10.88686 -10.87127 -10.62598 -10.27432 -10.09179 -9.93306 -9.49177 -9.07168 -8.90786 -8.27748 -8.21801 -5.94437 -3.96141 3.36613 3.40593 3.43446 4.06833 4.50430 5.07782 5.13890 5.23552 5.33697 5.41076 5.49589 5.56083 5.70641 5.76209 5.80644 5.88954 6.03198 6.13770 6.25784 6.36964 6.57939 6.61158 6.71355 6.87577 7.05140 7.20153 7.22619 7.28841 7.75545 7.92880 8.07206 8.50880 9.11301 9.67416 11.16879 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.081707 B = 0.006681 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.606466 B = 4190.167533 C = 4397.747551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.104 4.104 7 C 0.021 3.979 8 C -0.519 4.519 9 H 0.053 0.947 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.112 4.112 17 C 0.057 3.943 18 H 0.021 0.979 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.019 0.981 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 -7.084 -0.818 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.107 4.107 6 C -0.142 4.142 7 C -0.016 4.016 8 C -0.558 4.558 9 H 0.071 0.929 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.150 4.150 17 C -0.071 4.071 18 H 0.039 0.961 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.198 -7.119 -1.225 14.176 hybrid contribution 0.730 0.461 0.679 1.099 sum -11.467 -6.659 -0.546 13.272 Atomic orbital electron populations 1.22336 0.88062 1.01741 1.00157 1.61947 1.06854 1.14515 1.43604 1.22165 0.96880 0.88244 0.99903 1.21667 0.92377 1.01543 0.99214 1.21260 0.97068 0.94304 0.98036 1.21648 0.91584 1.00882 1.00072 1.19134 0.94839 0.90667 0.96974 1.21277 0.92650 0.93215 1.48640 0.92874 1.25017 0.98484 0.95502 0.95453 1.69954 1.35481 0.98154 1.50109 0.86687 0.85824 0.76983 0.78676 1.20269 1.21333 1.20304 1.21681 0.93155 0.98151 1.01999 1.22105 0.96494 0.97395 0.91083 0.96064 0.91731 0.91616 0.91237 0.95212 0.90493 0.91485 0.92218 0.93611 0.93397 0.96301 0.96957 0.93051 0.91908 0.91385 0.95272 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.07 0.58 0.85 16 2 N -0.54 -7.49 4.91 -242.95 -1.19 -8.68 16 3 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 4 C -0.11 -1.88 5.08 -26.65 -0.14 -2.01 16 5 C -0.09 -1.56 2.25 -90.50 -0.20 -1.76 16 6 C -0.10 -2.21 4.62 -26.73 -0.12 -2.33 16 7 C 0.02 0.55 4.74 -27.88 -0.13 0.41 16 8 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C -0.11 -1.67 5.38 -26.65 -0.14 -1.81 16 17 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 18 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 21 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 1.43 6.71 -51.93 -0.35 1.08 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 269.47 15.07 4.06 4.06 Total: -1.00 -30.22 269.47 -8.18 -38.40 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.15 Total: -5.16 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.62 Total: -18.94 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.46 Total: -35.35 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.22 -8.18 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259285745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds