Wall clock time and date at job start Mon Mar 30 2020 02:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46847 * 111.00065 * 2 1
4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1
5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2
6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3
7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4
8 8 C 1.50702 * 109.47332 * 179.97438 * 7 6 5
9 9 H 1.07999 * 119.99819 * 359.97438 * 8 7 6
10 10 C 1.37876 * 120.00010 * 179.97438 * 8 7 6
11 11 N 1.31509 * 120.00007 * 0.02562 * 10 8 7
12 12 Si 1.86803 * 119.99727 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.46850 * 60.00265 * 12 10 8
14 14 H 1.48506 * 109.46681 * 179.97438 * 12 10 8
15 15 H 1.48496 * 109.47233 * 299.99635 * 12 10 8
16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3
17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3
18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3
19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3
20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3
21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1
22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1
23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2
24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2
25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3
26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4
27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4
28 28 H 1.09002 * 109.46849 * 300.00072 * 7 6 5
29 29 H 1.09004 * 109.47035 * 59.99259 * 7 6 5
30 30 H 0.97004 * 120.00394 * 179.97438 * 11 10 8
31 31 H 1.09001 * 109.50326 * 182.41022 * 16 5 4
32 32 H 1.08996 * 109.53714 * 62.30612 * 16 5 4
33 33 H 1.09005 * 109.46673 * 294.18102 * 17 2 1
34 34 H 1.09003 * 109.46587 * 54.14643 * 17 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3709 0.0000
4 6 3.5182 1.3342 -0.1467
5 6 4.1188 0.5370 1.0145
6 6 5.6361 0.4450 0.8407
7 6 6.2487 1.8420 0.9590
8 6 7.7432 1.7513 0.7884
9 1 8.2096 0.7930 0.6135
10 6 8.5152 2.8917 0.8556
11 7 7.9474 4.0585 1.0691
12 14 10.3679 2.7791 0.6448
13 1 10.6804 2.2125 -0.6918
14 1 10.9623 4.1353 0.7583
15 1 10.9336 1.9003 1.6997
16 6 3.5182 -0.8715 1.0210
17 6 1.9952 -0.7707 1.1338
18 1 -0.3634 0.4471 0.9253
19 1 -0.3633 -1.0249 -0.0754
20 1 -0.3633 0.5778 -0.8499
21 1 1.5634 1.9257 -0.8330
22 1 1.7324 1.8608 0.9376
23 1 3.9099 2.3512 -0.1310
24 1 3.7820 0.8572 -1.0905
25 1 3.8886 1.0355 1.9561
26 1 6.0519 -0.2007 1.6142
27 1 5.8648 0.0298 -0.1408
28 1 5.8328 2.4877 0.1856
29 1 6.0198 2.2571 1.9406
30 1 8.4905 4.8608 1.1167
31 1 3.9098 -1.4302 1.8710
32 1 3.7814 -1.3842 0.0959
33 1 1.7324 -0.2708 2.0661
34 1 1.5634 -1.7715 1.1243
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259285745.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:12:41
Heat of formation + Delta-G solvation = -27.494179 kcal
Electronic energy + Delta-G solvation = -12724.952346 eV
Core-core repulsion = 10656.410713 eV
Total energy + Delta-G solvation = -2068.541633 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.85738 -34.98586 -32.72838 -30.62354 -29.95299 -26.68191 -24.32843 -22.96131
-21.99584 -20.00475 -19.18535 -16.28313 -15.47827 -14.91533 -14.53495 -14.44416
-13.98043 -13.31714 -12.97740 -12.45525 -12.19269 -12.05791 -11.98131 -11.41835
-11.08579 -10.88686 -10.87127 -10.62598 -10.27432 -10.09179 -9.93306 -9.49177
-9.07168 -8.90786 -8.27748 -8.21801 -5.94437 -3.96141 3.36613 3.40593
3.43446 4.06833 4.50430 5.07782 5.13890 5.23552 5.33697 5.41076
5.49589 5.56083 5.70641 5.76209 5.80644 5.88954 6.03198 6.13770
6.25784 6.36964 6.57939 6.61158 6.71355 6.87577 7.05140 7.20153
7.22619 7.28841 7.75545 7.92880 8.07206 8.50880 9.11301 9.67416
11.16879
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.081707 B = 0.006681 C = 0.006365
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 342.606466 B = 4190.167533 C = 4397.747551
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.544 5.544
3 C 0.056 3.944
4 C -0.110 4.110
5 C -0.088 4.088
6 C -0.104 4.104
7 C 0.021 3.979
8 C -0.519 4.519
9 H 0.053 0.947
10 C 0.056 3.944
11 N -0.897 5.897
12 Si 0.890 3.110
13 H -0.277 1.277
14 H -0.288 1.288
15 H -0.277 1.277
16 C -0.112 4.112
17 C 0.057 3.943
18 H 0.021 0.979
19 H 0.064 0.936
20 H 0.065 0.935
21 H 0.069 0.931
22 H 0.030 0.970
23 H 0.077 0.923
24 H 0.066 0.934
25 H 0.059 0.941
26 H 0.045 0.955
27 H 0.047 0.953
28 H 0.019 0.981
29 H 0.012 0.988
30 H 0.260 0.740
31 H 0.062 0.938
32 H 0.067 0.933
33 H 0.029 0.971
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.394 -7.084 -0.818 14.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.269 5.269
3 C -0.072 4.072
4 C -0.148 4.148
5 C -0.107 4.107
6 C -0.142 4.142
7 C -0.016 4.016
8 C -0.558 4.558
9 H 0.071 0.929
10 C -0.145 4.145
11 N -0.537 5.537
12 Si 0.718 3.282
13 H -0.203 1.203
14 H -0.213 1.213
15 H -0.203 1.203
16 C -0.150 4.150
17 C -0.071 4.071
18 H 0.039 0.961
19 H 0.083 0.917
20 H 0.084 0.916
21 H 0.088 0.912
22 H 0.048 0.952
23 H 0.095 0.905
24 H 0.085 0.915
25 H 0.078 0.922
26 H 0.064 0.936
27 H 0.066 0.934
28 H 0.037 0.963
29 H 0.030 0.970
30 H 0.069 0.931
31 H 0.081 0.919
32 H 0.086 0.914
33 H 0.047 0.953
34 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -12.198 -7.119 -1.225 14.176
hybrid contribution 0.730 0.461 0.679 1.099
sum -11.467 -6.659 -0.546 13.272
Atomic orbital electron populations
1.22336 0.88062 1.01741 1.00157 1.61947 1.06854 1.14515 1.43604
1.22165 0.96880 0.88244 0.99903 1.21667 0.92377 1.01543 0.99214
1.21260 0.97068 0.94304 0.98036 1.21648 0.91584 1.00882 1.00072
1.19134 0.94839 0.90667 0.96974 1.21277 0.92650 0.93215 1.48640
0.92874 1.25017 0.98484 0.95502 0.95453 1.69954 1.35481 0.98154
1.50109 0.86687 0.85824 0.76983 0.78676 1.20269 1.21333 1.20304
1.21681 0.93155 0.98151 1.01999 1.22105 0.96494 0.97395 0.91083
0.96064 0.91731 0.91616 0.91237 0.95212 0.90493 0.91485 0.92218
0.93611 0.93397 0.96301 0.96957 0.93051 0.91908 0.91385 0.95272
0.91433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 9.59 60.07 0.58 0.85 16
2 N -0.54 -7.49 4.91 -242.95 -1.19 -8.68 16
3 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16
4 C -0.11 -1.88 5.08 -26.65 -0.14 -2.01 16
5 C -0.09 -1.56 2.25 -90.50 -0.20 -1.76 16
6 C -0.10 -2.21 4.62 -26.73 -0.12 -2.33 16
7 C 0.02 0.55 4.74 -27.88 -0.13 0.41 16
8 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16
9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
11 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16
12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
16 C -0.11 -1.67 5.38 -26.65 -0.14 -1.81 16
17 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16
18 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
20 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16
21 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16
22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
23 H 0.08 1.43 6.71 -51.93 -0.35 1.08 16
24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
28 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16
29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16
LS Contribution 269.47 15.07 4.06 4.06
Total: -1.00 -30.22 269.47 -8.18 -38.40
By element:
Atomic # 1 Polarization: 0.98 SS G_CDS: -6.15 Total: -5.16 kcal
Atomic # 6 Polarization: -18.32 SS G_CDS: -0.62 Total: -18.94 kcal
Atomic # 7 Polarization: -34.89 SS G_CDS: -0.46 Total: -35.35 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -30.22 -8.18 -38.40 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259285745.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal
(2) G-P(sol) polarization free energy of solvation -30.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds