Wall clock time and date at job start Mon Mar 30 2020 02:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46847 * 111.00065 * 2 1
4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1
5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2
6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3
7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4
8 8 C 1.50702 * 109.47332 * 179.97438 * 7 6 5
9 9 H 1.07999 * 119.99819 * 359.97438 * 8 7 6
10 10 C 1.37876 * 120.00010 * 179.97438 * 8 7 6
11 11 N 1.31509 * 120.00007 * 0.02562 * 10 8 7
12 12 Si 1.86803 * 119.99727 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.46850 * 60.00265 * 12 10 8
14 14 H 1.48506 * 109.46681 * 179.97438 * 12 10 8
15 15 H 1.48496 * 109.47233 * 299.99635 * 12 10 8
16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3
17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3
18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3
19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3
20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3
21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1
22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1
23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2
24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2
25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3
26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4
27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4
28 28 H 1.09002 * 109.46849 * 300.00072 * 7 6 5
29 29 H 1.09004 * 109.47035 * 59.99259 * 7 6 5
30 30 H 0.97004 * 120.00394 * 179.97438 * 11 10 8
31 31 H 1.09001 * 109.50326 * 182.41022 * 16 5 4
32 32 H 1.08996 * 109.53714 * 62.30612 * 16 5 4
33 33 H 1.09005 * 109.46673 * 294.18102 * 17 2 1
34 34 H 1.09003 * 109.46587 * 54.14643 * 17 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3709 0.0000
4 6 3.5182 1.3342 -0.1467
5 6 4.1188 0.5370 1.0145
6 6 5.6361 0.4450 0.8407
7 6 6.2487 1.8420 0.9590
8 6 7.7432 1.7513 0.7884
9 1 8.2096 0.7930 0.6135
10 6 8.5152 2.8917 0.8556
11 7 7.9474 4.0585 1.0691
12 14 10.3679 2.7791 0.6448
13 1 10.6804 2.2125 -0.6918
14 1 10.9623 4.1353 0.7583
15 1 10.9336 1.9003 1.6997
16 6 3.5182 -0.8715 1.0210
17 6 1.9952 -0.7707 1.1338
18 1 -0.3634 0.4471 0.9253
19 1 -0.3633 -1.0249 -0.0754
20 1 -0.3633 0.5778 -0.8499
21 1 1.5634 1.9257 -0.8330
22 1 1.7324 1.8608 0.9376
23 1 3.9099 2.3512 -0.1310
24 1 3.7820 0.8572 -1.0905
25 1 3.8886 1.0355 1.9561
26 1 6.0519 -0.2007 1.6142
27 1 5.8648 0.0298 -0.1408
28 1 5.8328 2.4877 0.1856
29 1 6.0198 2.2571 1.9406
30 1 8.4905 4.8608 1.1167
31 1 3.9098 -1.4302 1.8710
32 1 3.7814 -1.3842 0.0959
33 1 1.7324 -0.2708 2.0661
34 1 1.5634 -1.7715 1.1243
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259285745.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:12:41
Heat of formation + Delta-G solvation = -46.252192 kcal
Electronic energy + Delta-G solvation = -12725.765754 eV
Core-core repulsion = 10656.410713 eV
Total energy + Delta-G solvation = -2069.355041 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.08001 -36.54813 -34.71541 -31.93899 -31.58742 -28.22410 -25.92379 -24.27162
-23.47830 -21.62563 -20.56500 -18.46521 -16.69235 -16.51843 -15.99462 -15.72348
-15.35858 -14.74861 -14.56318 -14.05332 -13.79112 -13.39054 -13.25133 -12.86570
-12.74881 -12.63009 -12.35318 -12.08503 -11.87842 -11.75876 -11.55336 -11.25904
-10.95361 -10.71910 -10.50703 -9.26058 -8.18828 -6.29983 1.39358 1.42791
1.50679 2.41569 3.04187 3.13797 3.90505 3.93484 3.95134 4.25531
4.39559 4.51791 4.55464 4.65298 4.69088 4.77548 4.81638 4.90398
4.95309 5.02901 5.07763 5.16057 5.24002 5.28812 5.42236 5.48885
5.59442 5.82153 5.88702 6.13891 6.20834 6.28349 6.87496 7.39019
8.92708
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.081707 B = 0.006681 C = 0.006365
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 342.606466 B = 4190.167533 C = 4397.747551
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.556 5.556
3 C 0.063 3.937
4 C -0.108 4.108
5 C -0.084 4.084
6 C -0.092 4.092
7 C 0.026 3.974
8 C -0.546 4.546
9 H 0.057 0.943
10 C -0.001 4.001
11 N -0.934 5.934
12 Si 0.964 3.036
13 H -0.267 1.267
14 H -0.282 1.282
15 H -0.267 1.267
16 C -0.106 4.106
17 C 0.059 3.941
18 H 0.025 0.975
19 H 0.080 0.920
20 H 0.073 0.927
21 H 0.082 0.918
22 H 0.027 0.973
23 H 0.049 0.951
24 H 0.062 0.938
25 H 0.049 0.951
26 H 0.048 0.952
27 H 0.047 0.953
28 H -0.002 1.002
29 H -0.016 1.016
30 H 0.263 0.737
31 H 0.074 0.926
32 H 0.066 0.934
33 H 0.029 0.971
34 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.748 -8.473 -1.043 15.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.281 5.281
3 C -0.065 4.065
4 C -0.146 4.146
5 C -0.103 4.103
6 C -0.130 4.130
7 C -0.011 4.011
8 C -0.584 4.584
9 H 0.076 0.924
10 C -0.198 4.198
11 N -0.575 5.575
12 Si 0.789 3.211
13 H -0.192 1.192
14 H -0.207 1.207
15 H -0.192 1.192
16 C -0.144 4.144
17 C -0.069 4.069
18 H 0.044 0.956
19 H 0.099 0.901
20 H 0.092 0.908
21 H 0.100 0.900
22 H 0.045 0.955
23 H 0.068 0.932
24 H 0.080 0.920
25 H 0.068 0.932
26 H 0.066 0.934
27 H 0.066 0.934
28 H 0.016 0.984
29 H 0.002 0.998
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.085 0.915
33 H 0.047 0.953
34 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -12.568 -8.525 -1.451 15.256
hybrid contribution 0.817 0.915 0.749 1.437
sum -11.751 -7.610 -0.702 14.017
Atomic orbital electron populations
1.22410 0.86003 1.03069 1.00774 1.61946 1.08747 1.13560 1.43872
1.22037 0.94759 0.89385 1.00341 1.21574 0.94592 0.99719 0.98677
1.21174 0.94703 0.96638 0.97755 1.21475 0.93991 0.97464 1.00063
1.19028 0.94344 0.93242 0.94499 1.21738 0.94115 0.93652 1.48906
0.92428 1.25984 1.04046 0.94987 0.94804 1.70093 1.37597 0.98978
1.50803 0.85517 0.79100 0.77347 0.79186 1.19166 1.20729 1.19178
1.21610 0.94535 0.95729 1.02478 1.22111 0.95087 0.98665 0.91000
0.95628 0.90109 0.90781 0.89978 0.95451 0.93186 0.91952 0.93226
0.93370 0.93384 0.98411 0.99763 0.92807 0.90772 0.91477 0.95265
0.89033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 9.59 127.69 1.22 1.70 16
2 N -0.56 -14.02 4.91 -922.54 -4.53 -18.55 16
3 C 0.06 1.76 5.46 86.33 0.47 2.23 16
4 C -0.11 -3.71 5.08 30.65 0.16 -3.56 16
5 C -0.08 -2.98 2.25 -10.71 -0.02 -3.00 16
6 C -0.09 -3.96 4.62 30.59 0.14 -3.82 16
7 C 0.03 1.41 4.74 29.85 0.14 1.55 16
8 C -0.55 -32.15 9.11 25.60 0.23 -31.91 16
9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
10 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
11 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16
12 Si 0.96 45.17 29.54 68.60 2.03 47.20 16
13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16
15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
16 C -0.11 -2.97 5.38 30.65 0.16 -2.81 16
17 C 0.06 1.42 5.46 86.33 0.47 1.90 16
18 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16
19 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
20 H 0.07 1.27 8.09 -2.38 -0.02 1.25 16
21 H 0.08 2.08 8.09 -2.38 -0.02 2.06 16
22 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16
23 H 0.05 1.96 6.71 -2.39 -0.02 1.94 16
24 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16
25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16
27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.00 -0.14 6.64 -2.39 -0.02 -0.16 16
29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16
31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
33 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16
34 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16
Total: -1.00 -64.84 269.47 2.25 -62.59
By element:
Atomic # 1 Polarization: 2.95 SS G_CDS: 1.02 Total: 3.98 kcal
Atomic # 6 Polarization: -40.75 SS G_CDS: 3.44 Total: -37.31 kcal
Atomic # 7 Polarization: -72.21 SS G_CDS: -4.25 Total: -76.46 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal
Total: -64.84 2.25 -62.59 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259285745.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.338 kcal
(2) G-P(sol) polarization free energy of solvation -64.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds