Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.52997 * 109.47190 * 65.32010 * 6 5 4 8 8 C 1.50702 * 109.47332 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00010 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00007 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99727 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46850 * 60.00265 * 12 10 8 14 14 H 1.48506 * 109.46681 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47233 * 299.99635 * 12 10 8 16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 28 28 H 1.09002 * 109.46849 * 300.00072 * 7 6 5 29 29 H 1.09004 * 109.47035 * 59.99259 * 7 6 5 30 30 H 0.97004 * 120.00394 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.50326 * 182.41022 * 16 5 4 32 32 H 1.08996 * 109.53714 * 62.30612 * 16 5 4 33 33 H 1.09005 * 109.46673 * 294.18102 * 17 2 1 34 34 H 1.09003 * 109.46587 * 54.14643 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2487 1.8420 0.9590 8 6 7.7432 1.7513 0.7884 9 1 8.2096 0.7930 0.6135 10 6 8.5152 2.8917 0.8556 11 7 7.9474 4.0585 1.0691 12 14 10.3679 2.7791 0.6448 13 1 10.6804 2.2125 -0.6918 14 1 10.9623 4.1353 0.7583 15 1 10.9336 1.9003 1.6997 16 6 3.5182 -0.8715 1.0210 17 6 1.9952 -0.7707 1.1338 18 1 -0.3634 0.4471 0.9253 19 1 -0.3633 -1.0249 -0.0754 20 1 -0.3633 0.5778 -0.8499 21 1 1.5634 1.9257 -0.8330 22 1 1.7324 1.8608 0.9376 23 1 3.9099 2.3512 -0.1310 24 1 3.7820 0.8572 -1.0905 25 1 3.8886 1.0355 1.9561 26 1 6.0519 -0.2007 1.6142 27 1 5.8648 0.0298 -0.1408 28 1 5.8328 2.4877 0.1856 29 1 6.0198 2.2571 1.9406 30 1 8.4905 4.8608 1.1167 31 1 3.9098 -1.4302 1.8710 32 1 3.7814 -1.3842 0.0959 33 1 1.7324 -0.2708 2.0661 34 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259285745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -46.252192 kcal Electronic energy + Delta-G solvation = -12725.765754 eV Core-core repulsion = 10656.410713 eV Total energy + Delta-G solvation = -2069.355041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08001 -36.54813 -34.71541 -31.93899 -31.58742 -28.22410 -25.92379 -24.27162 -23.47830 -21.62563 -20.56500 -18.46521 -16.69235 -16.51843 -15.99462 -15.72348 -15.35858 -14.74861 -14.56318 -14.05332 -13.79112 -13.39054 -13.25133 -12.86570 -12.74881 -12.63009 -12.35318 -12.08503 -11.87842 -11.75876 -11.55336 -11.25904 -10.95361 -10.71910 -10.50703 -9.26058 -8.18828 -6.29983 1.39358 1.42791 1.50679 2.41569 3.04187 3.13797 3.90505 3.93484 3.95134 4.25531 4.39559 4.51791 4.55464 4.65298 4.69088 4.77548 4.81638 4.90398 4.95309 5.02901 5.07763 5.16057 5.24002 5.28812 5.42236 5.48885 5.59442 5.82153 5.88702 6.13891 6.20834 6.28349 6.87496 7.39019 8.92708 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.081707 B = 0.006681 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.606466 B = 4190.167533 C = 4397.747551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.063 3.937 4 C -0.108 4.108 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.026 3.974 8 C -0.546 4.546 9 H 0.057 0.943 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.106 4.106 17 C 0.059 3.941 18 H 0.025 0.975 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.047 0.953 28 H -0.002 1.002 29 H -0.016 1.016 30 H 0.263 0.737 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 -8.473 -1.043 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.065 4.065 4 C -0.146 4.146 5 C -0.103 4.103 6 C -0.130 4.130 7 C -0.011 4.011 8 C -0.584 4.584 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.144 4.144 17 C -0.069 4.069 18 H 0.044 0.956 19 H 0.099 0.901 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.002 0.998 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.568 -8.525 -1.451 15.256 hybrid contribution 0.817 0.915 0.749 1.437 sum -11.751 -7.610 -0.702 14.017 Atomic orbital electron populations 1.22410 0.86003 1.03069 1.00774 1.61946 1.08747 1.13560 1.43872 1.22037 0.94759 0.89385 1.00341 1.21574 0.94592 0.99719 0.98677 1.21174 0.94703 0.96638 0.97755 1.21475 0.93991 0.97464 1.00063 1.19028 0.94344 0.93242 0.94499 1.21738 0.94115 0.93652 1.48906 0.92428 1.25984 1.04046 0.94987 0.94804 1.70093 1.37597 0.98978 1.50803 0.85517 0.79100 0.77347 0.79186 1.19166 1.20729 1.19178 1.21610 0.94535 0.95729 1.02478 1.22111 0.95087 0.98665 0.91000 0.95628 0.90109 0.90781 0.89978 0.95451 0.93186 0.91952 0.93226 0.93370 0.93384 0.98411 0.99763 0.92807 0.90772 0.91477 0.95265 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.59 127.69 1.22 1.70 16 2 N -0.56 -14.02 4.91 -922.54 -4.53 -18.55 16 3 C 0.06 1.76 5.46 86.33 0.47 2.23 16 4 C -0.11 -3.71 5.08 30.65 0.16 -3.56 16 5 C -0.08 -2.98 2.25 -10.71 -0.02 -3.00 16 6 C -0.09 -3.96 4.62 30.59 0.14 -3.82 16 7 C 0.03 1.41 4.74 29.85 0.14 1.55 16 8 C -0.55 -32.15 9.11 25.60 0.23 -31.91 16 9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 10 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 11 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 12 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 C -0.11 -2.97 5.38 30.65 0.16 -2.81 16 17 C 0.06 1.42 5.46 86.33 0.47 1.90 16 18 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 19 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.07 1.27 8.09 -2.38 -0.02 1.25 16 21 H 0.08 2.08 8.09 -2.38 -0.02 2.06 16 22 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.05 1.96 6.71 -2.39 -0.02 1.94 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.00 -0.14 6.64 -2.39 -0.02 -0.16 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -64.84 269.47 2.25 -62.59 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.02 Total: 3.98 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.44 Total: -37.31 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -4.25 Total: -76.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.84 2.25 -62.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259285745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.338 kcal (2) G-P(sol) polarization free energy of solvation -64.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds