Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46626 * 2 1 4 4 C 1.46845 * 111.00362 * 66.04809 * 3 2 1 5 5 C 1.53031 * 109.52355 * 174.15705 * 4 3 2 6 6 C 1.53120 * 109.27889 * 59.17893 * 5 4 3 7 7 C 1.53119 * 109.16026 * 302.34545 * 6 5 4 8 8 H 1.08999 * 109.49926 * 297.66918 * 7 6 5 9 9 C 1.53008 * 109.50286 * 177.59632 * 7 6 5 10 10 C 1.50694 * 109.47040 * 64.99650 * 9 7 6 11 11 H 1.08002 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.37881 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99748 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00208 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46708 * 90.00552 * 14 12 10 16 16 H 1.48506 * 109.46993 * 210.00091 * 14 12 10 17 17 H 1.48493 * 109.47014 * 330.00459 * 14 12 10 18 18 C 1.46844 * 110.99957 * 301.83181 * 3 2 1 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.00347 * 1 2 3 21 21 H 1.09000 * 109.47050 * 60.00176 * 1 2 3 22 22 H 1.09000 * 109.47050 * 119.99824 * 2 1 3 23 23 H 1.09001 * 109.46801 * 239.99937 * 2 1 3 24 24 H 1.09003 * 109.45885 * 294.17628 * 4 3 2 25 25 H 1.08997 * 109.45961 * 54.15065 * 4 3 2 26 26 H 1.09000 * 109.50402 * 179.11205 * 5 4 3 27 27 H 1.09001 * 109.50760 * 299.23928 * 5 4 3 28 28 H 1.09007 * 109.52351 * 62.24966 * 6 5 4 29 29 H 1.09000 * 109.52425 * 182.37312 * 6 5 4 30 30 H 1.09001 * 109.46925 * 184.99760 * 9 7 6 31 31 H 1.08994 * 109.46990 * 304.99559 * 9 7 6 32 32 H 0.96996 * 120.00270 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.46829 * 305.85617 * 18 3 2 34 34 H 1.09000 * 109.46270 * 65.82786 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6703 2.0668 1.2528 5 6 2.3184 3.4528 1.2788 6 6 1.8233 4.2649 0.0788 7 6 2.1566 3.5099 -1.2109 8 1 3.2379 3.4076 -1.3036 9 6 1.6123 4.2857 -2.4122 10 6 2.3313 5.6051 -2.5258 11 1 3.1000 5.8644 -1.8128 12 6 2.0086 6.4810 -3.5406 13 7 1.0729 6.1651 -4.4091 14 14 2.9004 8.1163 -3.6818 15 1 4.1007 7.9529 -4.5410 16 1 1.9928 9.1245 -4.2860 17 1 3.3168 8.5713 -2.3310 18 6 1.5133 2.1222 -1.1647 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 0.5873 2.1708 1.3199 25 1 2.0319 1.4810 2.0980 26 1 2.0460 3.9647 2.2018 27 1 3.4021 3.3489 1.2256 28 1 0.7444 4.4023 0.1520 29 1 2.3145 5.2379 0.0698 30 1 1.7711 3.7058 -3.3214 31 1 0.5455 4.4637 -2.2766 32 1 0.8455 6.7814 -5.1228 33 1 1.7606 1.5767 -2.0755 34 1 0.4310 2.2260 -1.0864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259297017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -23.624944 kcal Electronic energy + Delta-G solvation = -13019.000637 eV Core-core repulsion = 10950.626787 eV Total energy + Delta-G solvation = -2068.373850 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.87384 -34.69074 -32.70707 -31.04743 -29.18373 -26.81420 -24.45913 -23.20503 -21.71797 -20.12208 -18.72476 -16.26442 -15.41234 -14.75098 -14.40085 -14.32273 -13.91176 -13.39808 -12.79796 -12.56155 -12.11650 -11.99017 -11.66858 -11.52339 -11.14896 -10.93662 -10.65428 -10.60303 -10.30765 -10.15195 -9.90218 -9.48341 -9.03075 -8.89723 -8.30056 -7.90714 -5.95241 -3.96274 3.34845 3.40982 3.44318 4.29262 4.50983 5.13123 5.23541 5.35127 5.41129 5.49449 5.52731 5.62969 5.79333 5.87707 5.92841 6.05255 6.11446 6.19677 6.24504 6.39750 6.42859 6.61755 6.65968 7.05640 7.13737 7.17798 7.49509 7.54272 7.73067 7.89055 8.05368 8.49515 9.10167 9.67021 11.16315 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.058047 B = 0.008353 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.253686 B = 3351.280903 C = 3662.136534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.058 3.942 5 C -0.119 4.119 6 C -0.105 4.105 7 C -0.077 4.077 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.059 3.941 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -8.867 9.407 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.070 4.070 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.095 4.095 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.550 4.550 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.068 4.068 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.290 -8.813 9.225 12.761 hybrid contribution -0.546 0.924 -0.154 1.084 sum -0.256 -7.888 9.071 12.024 Atomic orbital electron populations 1.22447 0.98650 1.01741 1.02348 1.22129 0.92675 0.90890 1.02091 1.62190 1.59441 1.01600 1.03001 1.22046 0.97692 0.95552 0.91734 1.21658 1.00889 0.94504 0.98629 1.21538 1.00161 0.99060 0.93513 1.21250 0.99969 0.91745 0.96575 0.91811 1.19106 0.96099 0.94284 0.91470 1.21242 1.19974 1.01916 1.11892 0.92559 1.25024 0.95278 0.98358 0.95900 1.69968 1.31065 1.36553 1.16124 0.86631 0.79547 0.83838 0.78215 1.20727 1.21342 1.19908 1.22278 0.96976 0.95701 0.91826 0.92616 0.92769 0.92032 0.91413 0.90960 0.95213 0.91908 0.92561 0.91663 0.93249 0.91141 0.96672 0.96803 0.93127 0.91464 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 9.21 37.16 0.34 -2.02 16 2 C 0.05 0.66 6.08 -3.82 -0.02 0.64 16 3 N -0.54 -8.59 4.86 -234.67 -1.14 -9.73 16 4 C 0.06 0.85 5.05 -3.84 -0.02 0.83 16 5 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 6 C -0.11 -2.03 5.05 -26.61 -0.13 -2.17 16 7 C -0.08 -1.62 2.30 -90.54 -0.21 -1.83 16 8 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 10 C -0.51 -14.47 8.44 -34.44 -0.29 -14.76 16 11 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 C 0.06 1.09 4.12 -3.84 -0.02 1.07 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.66 6.68 -51.93 -0.35 0.32 16 21 H 0.06 0.83 6.51 -51.93 -0.34 0.50 16 22 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.44 6.75 -51.93 -0.35 0.09 16 25 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.46 7.04 -51.93 -0.37 1.09 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 34 H 0.03 0.58 6.61 -51.93 -0.34 0.24 16 LS Contribution 263.60 15.07 3.97 3.97 Total: -1.00 -29.51 263.60 -8.08 -37.59 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.89 Total: -4.03 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.73 Total: -18.18 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.40 Total: -36.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.51 -8.08 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259297017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.966 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds