Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00255 * 2 1 4 4 C 1.46898 * 111.00162 * 123.95209 * 2 1 3 5 5 H 1.08996 * 109.47896 * 193.98385 * 4 2 1 6 6 C 1.50700 * 109.47090 * 73.97887 * 4 2 1 7 7 H 1.08003 * 120.00522 * 239.99843 * 6 4 2 8 8 C 1.37876 * 119.99835 * 60.00673 * 6 4 2 9 9 N 1.31520 * 119.99998 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00090 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47431 * 89.99775 * 10 8 6 12 12 H 1.48500 * 109.47055 * 209.99966 * 10 8 6 13 13 H 1.48504 * 109.47301 * 329.99405 * 10 8 6 14 14 C 1.52998 * 109.46913 * 313.98594 * 4 2 1 15 15 C 1.54268 * 110.03150 * 292.03703 * 14 4 2 16 16 C 1.54884 * 104.20147 * 217.10480 * 15 14 4 17 17 C 1.54894 * 102.74622 * 37.94573 * 16 15 14 18 18 C 1.53882 * 110.03481 * 174.87671 * 14 4 2 19 19 H 1.08993 * 109.47170 * 296.05263 * 1 2 3 20 20 H 1.08997 * 109.47006 * 56.05144 * 1 2 3 21 21 H 1.09003 * 109.46934 * 176.04318 * 1 2 3 22 22 H 1.08998 * 109.47492 * 175.59671 * 3 2 1 23 23 H 1.09005 * 109.46836 * 295.59434 * 3 2 1 24 24 H 1.08992 * 109.47352 * 55.59143 * 3 2 1 25 25 H 0.96992 * 119.99764 * 0.02562 * 9 8 6 26 26 H 1.09000 * 110.02121 * 53.48164 * 14 4 2 27 27 H 1.08995 * 110.48768 * 335.79138 * 15 14 4 28 28 H 1.09004 * 110.48419 * 98.42849 * 15 14 4 29 29 H 1.09002 * 110.76063 * 279.63141 * 16 15 14 30 30 H 1.09002 * 110.91438 * 156.32927 * 16 15 14 31 31 H 1.09004 * 110.48674 * 203.38243 * 17 16 15 32 32 H 1.09001 * 110.59966 * 80.78773 * 17 16 15 33 33 H 1.08994 * 110.02885 * 238.56765 * 18 14 4 34 34 H 1.09000 * 110.02801 * 359.97438 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0566 -0.5499 1.2613 6 6 1.8094 -2.2391 0.8805 7 1 1.2141 -2.8345 1.5569 8 6 2.3993 -2.8270 -0.2184 9 7 3.1239 -2.1020 -1.0424 10 14 2.1681 -4.6529 -0.5375 11 1 0.9652 -4.8593 -1.3835 12 1 3.3633 -5.1883 -1.2376 13 1 1.9922 -5.3630 0.7548 14 6 1.2430 -0.3714 2.4100 15 6 1.5842 1.0826 2.7963 16 6 1.6383 1.0618 4.3441 17 6 2.2946 -0.3086 4.6447 18 6 1.6947 -1.2560 3.5853 19 1 -0.3633 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 3.0822 1.3434 0.0789 23 1 1.7112 1.8697 -0.9269 24 1 1.5836 1.9187 0.8478 25 1 3.2436 -1.1538 -0.8768 26 1 0.1689 -0.4753 2.2557 27 1 2.5517 1.3697 2.3846 28 1 0.8049 1.7620 2.4510 29 1 0.6346 1.1103 4.7664 30 1 2.2550 1.8768 4.7229 31 1 2.0338 -0.6446 5.6483 32 1 3.3772 -0.2481 4.5330 33 1 0.8397 -1.7885 4.0019 34 1 2.4497 -1.9666 3.2490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259479740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -23.382394 kcal Electronic energy + Delta-G solvation = -13633.157711 eV Core-core repulsion = 11564.794379 eV Total energy + Delta-G solvation = -2068.363332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33109 -36.95007 -34.37805 -30.92883 -29.55453 -28.31543 -27.19796 -25.23809 -22.11820 -21.52847 -20.43632 -18.42433 -17.20288 -16.54506 -15.68386 -15.55987 -15.27186 -14.65783 -14.27397 -13.96911 -13.96485 -13.08783 -12.71053 -12.58092 -12.41368 -12.30284 -11.97691 -11.90739 -11.82345 -11.73655 -11.53377 -11.46493 -11.17932 -10.41175 -10.33893 -8.74377 -8.22632 -6.10348 1.56044 1.64338 1.80511 2.67217 3.29921 3.66843 3.84187 3.87724 3.95109 4.42914 4.49519 4.53844 4.58154 4.63871 4.69718 4.75541 4.79193 4.88810 4.97316 4.98118 5.01547 5.11153 5.13585 5.26160 5.34626 5.46878 5.55704 5.65045 6.08878 6.35385 6.71389 6.76566 6.96134 7.78660 9.06891 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.013912 C = 0.011256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.034070 B = 2012.194897 C = 2486.966980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.555 5.555 3 C 0.018 3.982 4 C 0.215 3.785 5 H -0.008 1.008 6 C -0.601 4.601 7 H 0.039 0.961 8 C -0.015 4.015 9 N -0.927 5.927 10 Si 1.105 2.895 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.109 4.109 19 H 0.029 0.971 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.274 0.726 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 5.658 8.406 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.279 5.279 3 C -0.130 4.130 4 C 0.109 3.891 5 H 0.010 0.990 6 C -0.639 4.639 7 H 0.058 0.942 8 C -0.218 4.218 9 N -0.563 5.563 10 Si 0.930 3.070 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.129 4.129 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.148 4.148 19 H 0.047 0.953 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.469 4.224 6.929 8.825 hybrid contribution -0.509 1.480 1.322 2.048 sum -3.978 5.704 8.250 10.790 Atomic orbital electron populations 1.22061 0.88509 1.00514 0.98993 1.62459 1.07579 1.11891 1.46003 1.22587 0.99086 0.90692 1.00614 1.19359 0.91768 0.92699 0.85290 0.99050 1.22100 1.35607 0.93817 1.12424 0.94228 1.26814 0.93080 1.08893 0.93004 1.70649 1.37513 1.10098 1.38058 0.83090 0.76372 0.71400 0.76137 1.20783 1.21446 1.20039 1.22284 0.99491 0.94723 0.96436 1.22640 1.00350 0.95818 0.96762 1.22485 1.01099 0.97093 0.94580 1.22360 0.99494 0.95364 0.98520 1.22045 0.99843 0.97954 0.94908 0.95303 0.92496 0.93785 0.94082 0.92470 0.93714 0.91499 0.92536 0.92906 0.91772 0.90794 0.90392 0.90370 0.92610 0.92883 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 8.64 127.69 1.10 3.09 16 2 N -0.56 -26.20 3.47 -927.78 -3.22 -29.42 16 3 C 0.02 0.73 8.42 127.69 1.07 1.80 16 4 C 0.21 10.65 0.87 44.17 0.04 10.69 16 5 H -0.01 -0.47 7.52 -2.39 -0.02 -0.49 16 6 C -0.60 -33.48 6.79 25.60 0.17 -33.31 16 7 H 0.04 2.21 7.21 -2.91 -0.02 2.19 16 8 C -0.02 -0.89 5.39 84.65 0.46 -0.43 16 9 N -0.93 -57.63 13.51 21.45 0.29 -57.34 16 10 Si 1.11 51.79 29.90 68.60 2.05 53.84 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 C -0.11 -4.41 1.93 -10.07 -0.02 -4.43 16 15 C -0.12 -3.91 4.31 31.67 0.14 -3.77 16 16 C -0.12 -3.09 6.91 31.89 0.22 -2.87 16 17 C -0.12 -3.56 6.83 31.67 0.22 -3.35 16 18 C -0.11 -4.14 5.66 31.32 0.18 -3.97 16 19 H 0.03 1.09 5.76 -2.39 -0.01 1.07 16 20 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.04 2.02 7.57 -2.39 -0.02 2.00 16 22 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 23 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.04 1.55 4.66 -2.39 -0.01 1.54 16 25 H 0.27 17.19 6.39 -92.71 -0.59 16.60 16 26 H 0.06 2.34 5.95 -2.39 -0.01 2.32 16 27 H 0.05 1.86 6.56 -2.39 -0.02 1.84 16 28 H 0.06 1.97 6.93 -2.38 -0.02 1.95 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 2.10 6.85 -2.39 -0.02 2.08 16 Total: -1.00 -63.49 254.21 3.93 -59.56 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.23 Total: 9.90 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.58 Total: -36.55 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.93 Total: -86.76 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -63.49 3.93 -59.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.180 kcal (2) G-P(sol) polarization free energy of solvation -63.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds