Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99452 * 2 1 4 4 C 1.46898 * 111.00157 * 123.95205 * 2 1 3 5 5 H 1.09001 * 109.47062 * 300.00401 * 4 2 1 6 6 C 1.53006 * 109.47006 * 60.00147 * 4 2 1 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 4 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 9 8 7 12 12 H 1.08006 * 120.00174 * 119.99893 * 11 9 8 13 13 C 1.37876 * 120.00174 * 299.99793 * 11 9 8 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00252 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47539 * 59.99736 * 15 13 11 17 17 H 1.48498 * 109.47420 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47178 * 299.99817 * 15 13 11 19 19 C 1.52997 * 109.47123 * 180.02562 * 4 2 1 20 20 H 1.09002 * 109.47549 * 296.04409 * 1 2 3 21 21 H 1.08994 * 109.47328 * 56.04605 * 1 2 3 22 22 H 1.09005 * 109.46967 * 176.04710 * 1 2 3 23 23 H 1.09007 * 109.46909 * 183.95377 * 3 2 1 24 24 H 1.08997 * 109.47651 * 303.95516 * 3 2 1 25 25 H 1.09002 * 109.47061 * 63.95566 * 3 2 1 26 26 H 1.08998 * 109.46505 * 59.99663 * 6 4 2 27 27 H 1.08996 * 109.46884 * 300.00544 * 6 4 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46832 * 60.00321 * 7 6 4 30 30 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 32 32 H 0.97002 * 119.99731 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.47045 * 60.00157 * 19 4 2 34 34 H 1.09001 * 109.47375 * 300.00082 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 1.5049 -2.2125 1.0492 7 6 2.0538 -3.0104 2.2337 8 6 3.5832 -2.9874 2.1992 9 6 4.0737 -1.5409 2.2877 10 1 3.7245 -1.0951 3.2189 11 6 5.5801 -1.5183 2.2531 12 1 6.0944 -0.9878 1.4653 13 6 6.3020 -2.1749 3.2271 14 7 5.6758 -2.8206 4.1867 15 14 8.1692 -2.1464 3.1847 16 1 8.6450 -0.7423 3.2708 17 1 8.7025 -2.9216 4.3335 18 1 8.6449 -2.7531 1.9154 19 6 3.5249 -0.7426 1.1040 20 1 -0.3634 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 3.0827 1.3433 -0.0709 24 1 1.5897 1.9164 -0.8524 25 1 1.7042 1.8723 0.9233 26 1 1.8544 -2.6583 0.1180 27 1 0.4154 -2.2287 1.0732 28 1 1.7047 -4.0411 2.1704 29 1 1.7046 -2.5646 3.1650 30 1 3.9742 -3.5563 3.0428 31 1 3.9324 -3.4332 1.2678 32 1 6.1837 -3.2828 4.8718 33 1 3.8740 0.2881 1.1673 34 1 3.8748 -1.1882 0.1729 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = -33.680001 kcal Electronic energy + Delta-G solvation = -13235.897649 eV Core-core repulsion = 11167.087779 eV Total energy + Delta-G solvation = -2068.809870 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09370 -36.91056 -34.49046 -31.82453 -30.23082 -28.54480 -26.55577 -24.83652 -22.60723 -21.62089 -20.40000 -18.38771 -16.91783 -16.31351 -15.85789 -15.60833 -15.10131 -14.68351 -14.44739 -14.24158 -13.56817 -13.31034 -13.06042 -12.86238 -12.78657 -12.39630 -12.16285 -12.07968 -11.99988 -11.63377 -11.59733 -11.19232 -10.79365 -10.50388 -10.30401 -9.23131 -8.06771 -6.20973 1.41156 1.42526 1.50175 2.43716 3.06723 3.19114 3.97803 4.02254 4.30715 4.41361 4.52380 4.53951 4.64597 4.70878 4.78856 4.82610 4.86422 4.99949 5.00557 5.02593 5.15242 5.17263 5.30891 5.43880 5.49511 5.63052 5.71453 6.02013 6.12251 6.23454 6.27330 6.42927 6.90930 7.46661 8.97059 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051678 B = 0.009824 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.685048 B = 2849.364053 C = 3256.160005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.555 5.555 3 C 0.022 3.978 4 C 0.092 3.908 5 H 0.021 0.979 6 C -0.096 4.096 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.048 3.952 10 H -0.011 1.011 11 C -0.535 4.535 12 H 0.049 0.951 13 C 0.012 3.988 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.087 4.087 20 H 0.021 0.979 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.043 0.957 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 3.678 -6.441 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.279 5.279 3 C -0.126 4.126 4 C -0.016 4.016 5 H 0.039 0.961 6 C -0.134 4.134 7 C -0.150 4.150 8 C -0.142 4.142 9 C 0.029 3.971 10 H 0.007 0.993 11 C -0.574 4.574 12 H 0.067 0.933 13 C -0.187 4.187 14 N -0.556 5.556 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.125 4.125 20 H 0.040 0.960 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.702 3.357 -6.721 11.497 hybrid contribution 0.961 0.355 1.133 1.527 sum -7.742 3.713 -5.589 10.245 Atomic orbital electron populations 1.22491 0.86457 1.02940 1.00745 1.62057 1.08825 1.13997 1.42992 1.22438 1.00990 0.88527 1.00645 1.21601 0.95090 0.94543 0.90406 0.96090 1.21499 0.99990 0.93516 0.98408 1.21527 0.96241 0.99572 0.97637 1.21436 0.93594 0.99356 0.99843 1.18584 0.93703 0.92603 0.92236 0.99310 1.21564 0.93017 1.32302 1.10469 0.93254 1.25741 1.02760 0.95052 0.95108 1.70021 1.36617 1.34631 1.14334 0.85700 0.80628 0.78231 0.77633 1.19762 1.20822 1.19680 1.21514 0.93229 0.98957 0.98780 0.95991 0.89918 0.90582 0.92035 0.89580 0.96151 0.91885 0.90581 0.91589 0.93740 0.92421 0.95483 0.93078 0.93872 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.21 127.69 1.18 1.68 16 2 N -0.55 -16.94 4.89 -923.26 -4.51 -21.45 16 3 C 0.02 0.61 9.11 127.69 1.16 1.77 16 4 C 0.09 3.32 1.95 44.92 0.09 3.41 16 5 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 6 C -0.10 -3.25 4.97 30.60 0.15 -3.10 16 7 C -0.11 -4.32 5.92 30.59 0.18 -4.14 16 8 C -0.10 -5.07 4.98 30.59 0.15 -4.92 16 9 C 0.05 2.47 2.10 -11.56 -0.02 2.45 16 10 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 11 C -0.54 -30.47 8.56 25.60 0.22 -30.25 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 13 C 0.01 0.67 5.30 84.65 0.45 1.12 16 14 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 15 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 C -0.09 -3.77 4.06 30.58 0.12 -3.65 16 20 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 21 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 22 H 0.08 1.69 6.30 -2.38 -0.02 1.68 16 23 H 0.06 1.87 6.24 -2.38 -0.01 1.85 16 24 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 25 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.08 2.13 6.40 -2.39 -0.02 2.12 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.04 1.86 6.35 -2.39 -0.02 1.84 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -60.95 260.15 2.48 -58.48 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.04 Total: 5.84 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.68 Total: -35.62 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -4.27 Total: -75.21 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.95 2.48 -58.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.796 kcal (2) G-P(sol) polarization free energy of solvation -60.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds