Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47799 * 111.00057 * 2 1 4 4 C 1.45865 * 112.92668 * 153.86075 * 3 2 1 5 5 C 1.54509 * 111.58423 * 61.32178 * 4 3 2 6 6 C 1.50464 * 108.85647 * 282.81991 * 5 4 3 7 7 C 1.54279 * 112.94689 * 92.21566 * 6 5 4 8 8 C 1.44267 * 111.00538 * 238.01884 * 2 1 3 9 9 H 1.09007 * 108.97838 * 98.74668 * 8 2 1 10 10 C 1.52998 * 108.97801 * 339.95837 * 8 2 1 11 11 C 1.50695 * 109.47517 * 177.62366 * 10 8 2 12 12 H 1.08002 * 119.99941 * 356.54293 * 11 10 8 13 13 C 1.37881 * 120.00406 * 176.54109 * 11 10 8 14 14 N 1.31507 * 120.00050 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99757 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47193 * 89.99908 * 15 13 11 17 17 H 1.48502 * 109.47079 * 209.99594 * 15 13 11 18 18 H 1.48497 * 109.47343 * 329.99853 * 15 13 11 19 19 H 1.09000 * 109.47414 * 66.06039 * 1 2 3 20 20 H 1.09005 * 109.47166 * 186.05557 * 1 2 3 21 21 H 1.09001 * 109.47096 * 306.05768 * 1 2 3 22 22 H 1.09006 * 108.79503 * 32.97188 * 3 2 1 23 23 H 1.09003 * 108.79376 * 274.75105 * 3 2 1 24 24 H 1.09002 * 109.05688 * 300.78332 * 4 3 2 25 25 H 1.09002 * 109.00451 * 181.82958 * 4 3 2 26 26 H 1.09006 * 109.57335 * 163.01172 * 5 4 3 27 27 H 1.08995 * 109.67781 * 42.69784 * 5 4 3 28 28 H 1.09000 * 108.76933 * 213.07587 * 6 5 4 29 29 H 1.09001 * 108.76789 * 331.35214 * 6 5 4 30 30 H 1.08997 * 108.92308 * 78.96578 * 7 6 5 31 31 H 1.09004 * 108.92109 * 197.52042 * 7 6 5 32 32 H 1.09005 * 109.47245 * 297.62390 * 10 8 2 33 33 H 1.09008 * 109.47555 * 57.62371 * 10 8 2 34 34 H 0.97001 * 119.99969 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9986 1.3798 0.0000 4 6 3.3282 1.4781 0.5919 5 6 4.3622 0.6381 -0.1908 6 6 4.1832 -0.8119 0.1689 7 6 3.2255 -1.5546 -0.7857 8 6 1.9861 -0.7133 -1.1424 9 1 2.2595 0.0054 -1.9151 10 6 0.8955 -1.6380 -1.6870 11 6 1.4046 -2.3457 -2.9162 12 1 2.3849 -2.1139 -3.3057 13 6 0.6190 -3.2892 -3.5437 14 7 1.0631 -3.9064 -4.6166 15 14 -1.0768 -3.6896 -2.8705 16 1 -2.0826 -2.7958 -3.4988 17 1 -1.4103 -5.1036 -3.1782 18 1 -1.0857 -3.4877 -1.3993 19 1 -0.3634 0.4170 -0.9392 20 1 -0.3634 -1.0220 0.1084 21 1 -0.3633 0.6049 0.8308 22 1 1.3163 2.0179 0.5616 23 1 2.0447 1.7383 -1.0284 24 1 3.2866 1.1223 1.6214 25 1 3.6419 2.5220 0.5886 26 1 5.3696 0.9586 0.0752 27 1 4.2077 0.7705 -1.2616 28 1 5.1561 -1.3027 0.1416 29 1 3.7874 -0.8755 1.1825 30 1 3.7615 -1.8025 -1.7019 31 1 2.8977 -2.4786 -0.3092 32 1 0.6304 -2.3738 -0.9278 33 1 0.0153 -1.0491 -1.9453 34 1 0.5105 -4.5704 -5.0578 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259813661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = -4.498901 kcal Electronic energy + Delta-G solvation = -13378.937247 eV Core-core repulsion = 11311.392765 eV Total energy + Delta-G solvation = -2067.544483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07612 -34.49065 -33.27298 -31.88676 -28.67321 -27.19671 -24.41507 -23.68570 -21.14456 -20.16286 -18.26833 -16.90791 -15.42925 -15.06103 -14.59602 -14.03751 -13.86028 -13.17142 -12.81452 -12.74746 -12.22738 -12.04048 -11.84060 -11.22820 -10.97688 -10.92423 -10.62285 -10.33451 -10.07382 -9.98412 -9.80883 -9.72404 -9.41425 -8.99051 -8.53125 -7.66784 -6.03149 -4.00444 3.30188 3.38160 3.41473 4.45654 4.46196 5.02915 5.29654 5.35210 5.43956 5.69446 5.70494 5.76682 5.90949 5.96291 6.02010 6.08058 6.21043 6.25195 6.40477 6.47785 6.51193 6.60121 6.67645 6.82331 6.99932 7.11232 7.13412 7.38068 7.62609 7.74254 7.96156 8.55859 9.01805 9.59400 11.10121 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046824 B = 0.011143 C = 0.009653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.837804 B = 2512.080107 C = 2899.894484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.532 5.532 3 C 0.053 3.947 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.088 4.088 8 C 0.096 3.904 9 H 0.038 0.962 10 C -0.023 4.023 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.876 3.124 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.265 1.265 19 H 0.027 0.973 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.015 0.985 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 8.786 9.797 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.256 5.256 3 C -0.075 4.075 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.149 4.149 7 C -0.127 4.127 8 C -0.012 4.012 9 H 0.056 0.944 10 C -0.061 4.061 11 C -0.553 4.553 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.704 3.296 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.189 1.189 19 H 0.046 0.954 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.091 8.405 10.102 13.306 hybrid contribution -1.229 0.066 -0.602 1.370 sum 0.862 8.470 9.499 12.757 Atomic orbital electron populations 1.22455 0.88157 1.02319 0.99143 1.61773 1.07168 1.12621 1.44086 1.20994 0.96587 0.90379 0.99495 1.20571 0.94930 0.99025 1.00330 1.21339 0.97587 0.96003 1.00342 1.21270 0.98425 0.94749 1.00485 1.21791 0.94482 0.97849 0.98549 1.21382 0.95942 0.95350 0.88546 0.94400 1.20094 0.94126 0.95023 0.96809 1.21113 1.04011 1.20933 1.09212 0.90862 1.25007 0.97998 0.95753 0.94670 1.69909 1.37637 1.26927 1.19807 0.86828 0.85062 0.77565 0.80150 1.20448 1.21400 1.18916 0.95449 0.90867 0.92990 0.92445 0.94962 0.91679 0.92537 0.92877 0.92062 0.93684 0.92260 0.91846 0.92292 0.95725 0.96735 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.18 60.06 0.49 0.96 16 2 N -0.53 -9.52 4.48 -239.75 -1.07 -10.60 16 3 C 0.05 0.80 4.96 -6.71 -0.03 0.77 16 4 C -0.11 -1.48 5.53 -29.32 -0.16 -1.64 16 5 C -0.12 -1.66 5.59 -27.21 -0.15 -1.81 16 6 C -0.11 -1.79 5.42 -27.33 -0.15 -1.94 16 7 C -0.09 -1.74 4.91 -25.55 -0.13 -1.87 16 8 C 0.10 1.98 1.85 -68.61 -0.13 1.85 16 9 H 0.04 0.82 6.51 -51.92 -0.34 0.48 16 10 C -0.02 -0.55 2.19 -27.89 -0.06 -0.61 16 11 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 12 H 0.07 2.23 7.20 -52.49 -0.38 1.85 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 15 Si 0.88 21.84 27.54 -169.99 -4.68 17.16 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.26 -6.33 6.44 56.52 0.36 -5.97 16 19 H 0.03 0.47 7.05 -51.93 -0.37 0.11 16 20 H 0.07 1.33 6.56 -51.93 -0.34 0.99 16 21 H 0.05 0.74 7.89 -51.93 -0.41 0.33 16 22 H 0.06 0.77 7.64 -51.93 -0.40 0.37 16 23 H 0.03 0.51 7.24 -51.93 -0.38 0.14 16 24 H 0.06 0.87 7.59 -51.93 -0.39 0.47 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.96 7.16 -51.93 -0.37 0.59 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.95 7.38 -51.93 -0.38 0.56 16 30 H 0.06 1.34 7.31 -51.93 -0.38 0.96 16 31 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 32 H 0.02 0.61 6.26 -51.93 -0.32 0.28 16 33 H 0.01 0.35 5.68 -51.92 -0.29 0.05 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 251.91 15.07 3.80 3.80 Total: -1.00 -29.76 251.91 -7.52 -37.28 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.61 Total: -3.16 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.73 Total: -17.32 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.30 Total: -37.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.68 Total: 17.16 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.76 -7.52 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.778 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds