Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99898 * 2 1 4 4 C 1.46900 * 111.00294 * 123.95288 * 2 1 3 5 5 H 1.08997 * 110.53432 * 302.61201 * 4 2 1 6 6 C 1.54953 * 110.52955 * 65.24489 * 4 2 1 7 7 C 1.54889 * 102.78008 * 156.56440 * 6 4 2 8 8 C 1.54270 * 104.19489 * 322.08850 * 7 6 4 9 9 C 1.53874 * 106.59833 * 23.60580 * 8 7 6 10 10 H 1.09001 * 110.02608 * 240.67140 * 9 8 7 11 11 C 1.52997 * 110.03229 * 119.28886 * 9 8 7 12 12 C 1.50701 * 109.47212 * 67.08810 * 11 9 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 9 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.09002 * 109.47324 * 296.04232 * 1 2 3 21 21 H 1.09000 * 109.47902 * 56.04670 * 1 2 3 22 22 H 1.09007 * 109.46960 * 176.04787 * 1 2 3 23 23 H 1.08997 * 109.47581 * 183.95764 * 3 2 1 24 24 H 1.09006 * 109.47048 * 303.95301 * 3 2 1 25 25 H 1.09000 * 109.47266 * 63.95116 * 3 2 1 26 26 H 1.09000 * 110.72185 * 38.25337 * 6 4 2 27 27 H 1.09001 * 110.76862 * 274.90231 * 6 4 2 28 28 H 1.08995 * 110.49368 * 203.40525 * 7 6 4 29 29 H 1.09005 * 110.48544 * 80.75961 * 7 6 4 30 30 H 1.08998 * 110.02791 * 264.31925 * 8 7 6 31 31 H 1.08998 * 110.03354 * 142.89430 * 8 7 6 32 32 H 1.09002 * 109.47153 * 307.08812 * 11 9 8 33 33 H 1.09001 * 109.46832 * 187.09003 * 11 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6189 -0.3622 2.0774 6 6 1.6230 -2.2640 1.0030 7 6 2.7051 -2.9646 1.8617 8 6 3.9893 -2.1554 1.5859 9 6 3.5381 -0.7580 1.1261 10 1 3.9029 -0.5609 0.1181 11 6 4.0640 0.3064 2.0910 12 6 5.5662 0.3761 1.9920 13 1 6.0930 -0.2736 1.3087 14 6 6.2678 1.2699 2.7728 15 7 5.6263 2.0613 3.6044 16 14 8.1297 1.3567 2.6495 17 1 8.5178 1.7120 1.2607 18 1 8.6402 2.3898 3.5862 19 1 8.7114 0.0371 3.0038 20 1 -0.3634 0.4512 0.9233 21 1 -0.3635 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 3.0827 1.3434 -0.0709 24 1 1.5897 1.9164 -0.8525 25 1 1.7043 1.8724 0.9233 26 1 1.6869 -2.5855 -0.0365 27 1 0.6280 -2.4526 1.4063 28 1 2.8314 -4.0001 1.5459 29 1 2.4435 -2.9164 2.9188 30 1 4.5723 -2.6367 0.8007 31 1 4.5829 -2.0753 2.4965 32 1 3.7788 0.0456 3.1103 33 1 3.6374 1.2751 1.8310 34 1 6.1199 2.6899 4.1540 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -18.510476 kcal Electronic energy + Delta-G solvation = -13180.787124 eV Core-core repulsion = 11112.635054 eV Total energy + Delta-G solvation = -2068.152070 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.68043 -34.89996 -32.97562 -30.29323 -27.43884 -27.00623 -25.59639 -23.15957 -21.47348 -19.72699 -18.54039 -16.16428 -15.75863 -14.85739 -14.30204 -14.15060 -13.89050 -13.06818 -12.68025 -12.26448 -12.02859 -11.86800 -11.43830 -11.30692 -11.04179 -10.82809 -10.50891 -10.39994 -10.34394 -10.21277 -9.84277 -9.59732 -9.02609 -8.88984 -8.29558 -7.87749 -5.95932 -3.97160 3.35358 3.39718 3.42436 4.42960 4.49755 5.18765 5.28742 5.39888 5.49398 5.61253 5.70658 5.89769 6.00536 6.04230 6.09679 6.17807 6.19928 6.30546 6.35193 6.44922 6.54964 6.63138 6.80499 6.99040 7.04795 7.26145 7.53969 7.60534 7.73669 7.92366 8.04857 8.48541 9.09553 9.66309 11.15224 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010267 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.084379 B = 2726.598739 C = 3149.114756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.022 3.978 4 C 0.078 3.922 5 H 0.043 0.957 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.109 4.109 9 C -0.077 4.077 10 H 0.067 0.933 11 C 0.025 3.975 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.019 0.981 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.012 0.988 33 H 0.019 0.981 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -5.537 -4.880 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.126 4.126 4 C -0.030 4.030 5 H 0.061 0.939 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.147 4.147 9 C -0.096 4.096 10 H 0.085 0.915 11 C -0.012 4.012 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.634 -5.612 -5.179 10.798 hybrid contribution 0.732 0.610 0.802 1.245 sum -6.902 -5.001 -4.378 9.582 Atomic orbital electron populations 1.22355 0.88848 1.01453 0.99767 1.62135 1.06554 1.14206 1.43376 1.22496 1.02521 0.88164 0.99391 1.22743 0.97052 0.92589 0.90640 0.93914 1.22512 0.97451 0.94970 1.00185 1.22343 0.96257 0.98335 0.99285 1.22081 0.96107 0.94964 1.01512 1.21866 0.90676 0.96205 1.00879 0.91452 1.19332 0.95519 0.92897 0.93439 1.21212 0.92182 1.19609 1.22112 0.92728 1.25012 0.98174 0.95781 0.95500 1.69955 1.35456 1.23099 1.25178 0.86711 0.86121 0.77649 0.77832 1.20292 1.21418 1.20324 0.96218 0.92117 0.91837 0.89542 0.92679 0.95629 0.91100 0.92999 0.92540 0.92240 0.93140 0.90842 0.96925 0.96287 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.40 60.06 0.56 0.91 16 2 N -0.54 -9.25 4.85 -241.12 -1.17 -10.42 16 3 C 0.02 0.39 8.24 60.07 0.49 0.89 16 4 C 0.08 1.43 2.15 -66.02 -0.14 1.29 16 5 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 6 C -0.11 -1.77 5.49 -24.70 -0.14 -1.90 16 7 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 8 C -0.11 -2.08 6.07 -25.61 -0.16 -2.24 16 9 C -0.08 -1.63 1.76 -89.50 -0.16 -1.78 16 10 H 0.07 1.48 7.40 -51.93 -0.38 1.10 16 11 C 0.03 0.64 3.81 -27.88 -0.11 0.53 16 12 C -0.51 -14.35 8.43 -34.44 -0.29 -14.64 16 13 H 0.05 1.50 7.69 -52.49 -0.40 1.09 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 21 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 22 H 0.06 0.81 7.19 -51.92 -0.37 0.44 16 23 H 0.09 1.73 5.78 -51.93 -0.30 1.43 16 24 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 25 H 0.03 0.47 7.92 -51.93 -0.41 0.06 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.72 7.96 -51.93 -0.41 0.31 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.55 7.38 -51.93 -0.38 1.17 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.51 5.99 -51.93 -0.31 0.20 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 265.19 15.07 4.00 4.00 Total: -1.00 -29.25 265.19 -7.56 -36.80 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.90 Total: -3.33 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.20 Total: -17.59 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.43 Total: -36.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.25 -7.56 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.294 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds