Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99898 * 2 1 4 4 C 1.46900 * 111.00294 * 123.95288 * 2 1 3 5 5 H 1.08997 * 110.53432 * 302.61201 * 4 2 1 6 6 C 1.54953 * 110.52955 * 65.24489 * 4 2 1 7 7 C 1.54889 * 102.78008 * 156.56440 * 6 4 2 8 8 C 1.54270 * 104.19489 * 322.08850 * 7 6 4 9 9 C 1.53874 * 106.59833 * 23.60580 * 8 7 6 10 10 H 1.09001 * 110.02608 * 240.67140 * 9 8 7 11 11 C 1.52997 * 110.03229 * 119.28886 * 9 8 7 12 12 C 1.50701 * 109.47212 * 67.08810 * 11 9 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 9 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.09002 * 109.47324 * 296.04232 * 1 2 3 21 21 H 1.09000 * 109.47902 * 56.04670 * 1 2 3 22 22 H 1.09007 * 109.46960 * 176.04787 * 1 2 3 23 23 H 1.08997 * 109.47581 * 183.95764 * 3 2 1 24 24 H 1.09006 * 109.47048 * 303.95301 * 3 2 1 25 25 H 1.09000 * 109.47266 * 63.95116 * 3 2 1 26 26 H 1.09000 * 110.72185 * 38.25337 * 6 4 2 27 27 H 1.09001 * 110.76862 * 274.90231 * 6 4 2 28 28 H 1.08995 * 110.49368 * 203.40525 * 7 6 4 29 29 H 1.09005 * 110.48544 * 80.75961 * 7 6 4 30 30 H 1.08998 * 110.02791 * 264.31925 * 8 7 6 31 31 H 1.08998 * 110.03354 * 142.89430 * 8 7 6 32 32 H 1.09002 * 109.47153 * 307.08812 * 11 9 8 33 33 H 1.09001 * 109.46832 * 187.09003 * 11 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6189 -0.3622 2.0774 6 6 1.6230 -2.2640 1.0030 7 6 2.7051 -2.9646 1.8617 8 6 3.9893 -2.1554 1.5859 9 6 3.5381 -0.7580 1.1261 10 1 3.9029 -0.5609 0.1181 11 6 4.0640 0.3064 2.0910 12 6 5.5662 0.3761 1.9920 13 1 6.0930 -0.2736 1.3087 14 6 6.2678 1.2699 2.7728 15 7 5.6263 2.0613 3.6044 16 14 8.1297 1.3567 2.6495 17 1 8.5178 1.7120 1.2607 18 1 8.6402 2.3898 3.5862 19 1 8.7114 0.0371 3.0038 20 1 -0.3634 0.4512 0.9233 21 1 -0.3635 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 3.0827 1.3434 -0.0709 24 1 1.5897 1.9164 -0.8525 25 1 1.7043 1.8724 0.9233 26 1 1.6869 -2.5855 -0.0365 27 1 0.6280 -2.4526 1.4063 28 1 2.8314 -4.0001 1.5459 29 1 2.4435 -2.9164 2.9188 30 1 4.5723 -2.6367 0.8007 31 1 4.5829 -2.0753 2.4965 32 1 3.7788 0.0456 3.1103 33 1 3.6374 1.2751 1.8310 34 1 6.1199 2.6899 4.1540 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -36.890041 kcal Electronic energy + Delta-G solvation = -13181.584122 eV Core-core repulsion = 11112.635054 eV Total energy + Delta-G solvation = -2068.949068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16859 -36.34981 -35.03313 -32.12992 -28.87614 -28.43675 -27.37591 -24.87255 -23.11336 -21.14659 -20.17385 -18.30572 -17.27566 -16.65316 -15.92947 -15.55600 -15.26263 -14.50132 -14.47267 -14.02369 -13.47446 -13.32326 -13.22090 -13.00944 -12.75644 -12.45745 -12.29666 -11.87067 -11.80783 -11.67813 -11.51210 -11.35239 -10.91922 -10.81959 -10.50575 -9.27420 -8.17601 -6.26913 1.38552 1.41232 1.48936 2.41230 3.08718 3.15311 3.77899 3.89830 4.15854 4.34954 4.47263 4.54916 4.60530 4.66921 4.71067 4.78856 4.90072 4.90949 5.03046 5.04686 5.11331 5.15613 5.28638 5.34262 5.44577 5.55710 5.62675 5.75929 5.88584 6.15555 6.28477 6.31005 6.88837 7.41206 8.93804 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010267 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.084379 B = 2726.598739 C = 3149.114756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.028 3.972 4 C 0.079 3.921 5 H 0.020 0.980 6 C -0.101 4.101 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.072 4.072 10 H 0.056 0.944 11 C 0.036 3.964 12 C -0.528 4.528 13 H 0.057 0.943 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.959 3.041 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.268 1.268 20 H 0.016 0.984 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.007 0.993 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.044 0.956 32 H -0.020 1.020 33 H -0.004 1.004 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 -6.981 -6.091 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.120 4.120 4 C -0.029 4.029 5 H 0.038 0.962 6 C -0.138 4.138 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.091 4.091 10 H 0.074 0.926 11 C -0.001 4.001 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.193 1.193 20 H 0.034 0.966 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.026 0.974 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.063 0.937 32 H -0.002 1.002 33 H 0.014 0.986 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.087 -7.070 -6.403 12.505 hybrid contribution 0.841 1.101 1.178 1.819 sum -7.246 -5.969 -5.225 10.744 Atomic orbital electron populations 1.22468 0.86375 1.03127 1.00473 1.62176 1.08746 1.13308 1.42355 1.22386 1.00790 0.89132 0.99685 1.22650 0.94881 0.95107 0.90297 0.96185 1.22464 0.98509 0.91926 1.00930 1.22319 0.94184 0.99395 0.99558 1.22038 0.97834 0.94509 1.00413 1.21702 0.93004 0.95803 0.98605 0.92602 1.19168 0.94765 0.93410 0.92794 1.21590 0.93486 1.19535 1.22003 0.92486 1.25928 1.03457 0.95357 0.95065 1.70096 1.37498 1.23872 1.26099 0.85594 0.79805 0.78017 0.78210 1.19270 1.20979 1.19278 0.96555 0.90164 0.89877 0.92625 0.89850 0.97443 0.89976 0.90482 0.89488 0.92329 0.92019 0.93697 1.00180 0.98620 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.40 127.69 1.20 1.80 16 2 N -0.54 -17.96 4.85 -916.77 -4.45 -22.41 16 3 C 0.03 1.02 8.24 127.69 1.05 2.07 16 4 C 0.08 2.86 2.15 46.01 0.10 2.96 16 5 H 0.02 0.82 7.85 -2.39 -0.02 0.80 16 6 C -0.10 -2.83 5.49 31.91 0.18 -2.66 16 7 C -0.12 -3.43 6.83 31.67 0.22 -3.22 16 8 C -0.11 -4.17 6.07 31.32 0.19 -3.98 16 9 C -0.07 -3.09 1.76 -10.07 -0.02 -3.11 16 10 H 0.06 2.50 7.40 -2.39 -0.02 2.48 16 11 C 0.04 1.92 3.81 29.85 0.11 2.03 16 12 C -0.53 -30.43 8.43 25.60 0.22 -30.21 16 13 H 0.06 3.18 7.69 -2.91 -0.02 3.16 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 16 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 21 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 22 H 0.08 1.80 7.19 -2.38 -0.02 1.79 16 23 H 0.05 2.31 5.78 -2.39 -0.01 2.30 16 24 H 0.08 2.45 8.12 -2.38 -0.02 2.43 16 25 H 0.01 0.27 7.92 -2.39 -0.02 0.25 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.08 1.84 7.96 -2.39 -0.02 1.82 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.94 7.38 -2.39 -0.02 1.92 16 32 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 33 H 0.00 -0.26 5.99 -2.39 -0.01 -0.27 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -64.44 265.19 2.61 -61.84 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.04 Total: 4.95 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 3.71 Total: -33.92 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -4.16 Total: -80.03 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.44 2.61 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.949 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds