Wall clock time and date at job start Mon Mar 30 2020 01:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 C 1.50702 * 109.47183 * 240.00127 * 2 1 3 5 5 H 1.07993 * 120.00208 * 245.35842 * 4 2 1 6 6 C 1.37880 * 119.99572 * 65.36172 * 4 2 1 7 7 N 1.31512 * 120.00330 * 355.30066 * 6 4 2 8 8 Si 1.86806 * 119.99727 * 175.30874 * 6 4 2 9 9 H 1.48492 * 109.47413 * 94.99363 * 8 6 4 10 10 H 1.48500 * 109.46945 * 214.99681 * 8 6 4 11 11 H 1.48503 * 109.46845 * 334.99236 * 8 6 4 12 12 C 1.52997 * 109.47040 * 120.00288 * 2 1 3 13 13 H 1.08993 * 108.91917 * 56.40216 * 12 2 1 14 14 C 1.45881 * 108.93827 * 175.10856 * 12 2 1 15 15 C 1.54306 * 112.18580 * 181.72795 * 14 12 2 16 16 C 1.50446 * 108.50123 * 281.45904 * 15 14 12 17 17 N 1.47995 * 112.82429 * 93.72789 * 16 15 14 18 18 C 1.48007 * 114.63049 * 318.09563 * 17 16 15 19 19 C 1.50310 * 112.76760 * 318.11162 * 18 17 16 20 20 H 1.08997 * 109.47065 * 305.22659 * 1 2 3 21 21 H 1.08999 * 109.46949 * 65.22493 * 1 2 3 22 22 H 1.08997 * 109.46940 * 185.22050 * 1 2 3 23 23 H 0.97003 * 120.00010 * 180.02562 * 7 6 4 24 24 H 1.09005 * 108.93949 * 302.42461 * 14 12 2 25 25 H 1.09003 * 108.94323 * 61.02962 * 14 12 2 26 26 H 1.08991 * 109.63461 * 41.16607 * 15 14 12 27 27 H 1.09004 * 109.62977 * 161.76107 * 15 14 12 28 28 H 1.09000 * 108.81861 * 214.59520 * 16 15 14 29 29 H 1.09010 * 108.80998 * 332.87118 * 16 15 14 30 30 H 1.00893 * 111.00126 * 84.83966 * 17 16 15 31 31 H 1.08997 * 108.81246 * 78.95501 * 18 17 16 32 32 H 1.09004 * 108.80763 * 197.33525 * 18 17 16 33 33 H 1.09001 * 109.68944 * 334.02536 * 19 18 17 34 34 H 1.08996 * 109.50293 * 213.47561 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1338 6 6 1.7928 -0.1783 -2.4797 7 7 1.0478 0.8983 -2.6041 8 14 2.5262 -0.9868 -3.9956 9 1 1.5327 -1.9163 -4.5906 10 1 2.8845 0.0571 -4.9891 11 1 3.7448 -1.7441 -3.6121 12 6 2.0400 -0.7213 1.2492 13 1 1.6199 -1.7267 1.2730 14 6 3.4940 -0.8173 1.1801 15 6 4.0861 -1.5730 2.3881 16 6 4.1214 -0.6375 3.5658 17 7 2.9210 -0.7497 4.4242 18 6 1.6440 -0.8716 3.6860 19 6 1.5675 0.0488 2.5001 20 1 -0.3633 0.5928 0.8395 21 1 -0.3633 0.4307 -0.9331 22 1 -0.3633 -1.0234 0.0935 23 1 0.8790 1.2724 -3.4830 24 1 3.7709 -1.3408 0.2649 25 1 3.9140 0.1882 1.1513 26 1 3.4613 -2.4345 2.6232 27 1 5.0977 -1.9039 2.1529 28 1 5.0042 -0.8600 4.1652 29 1 4.1970 0.3863 3.1993 30 1 3.0241 -1.4970 5.0941 31 1 1.5343 -1.8997 3.3409 32 1 0.8226 -0.6394 4.3639 33 1 2.2118 0.9127 2.6635 34 1 0.5377 0.3776 2.3605 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:29 Heat of formation + Delta-G solvation = -19.812826 kcal Electronic energy + Delta-G solvation = -13318.807999 eV Core-core repulsion = 11250.599455 eV Total energy + Delta-G solvation = -2068.208544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.80230 -34.90796 -32.20824 -31.78453 -29.11027 -26.05423 -24.52655 -23.99859 -20.54226 -19.67365 -18.85631 -16.34194 -16.19354 -14.78530 -14.40276 -14.13437 -13.26285 -13.03988 -12.68658 -12.49078 -11.83273 -11.73869 -11.56646 -11.07515 -10.84495 -10.56496 -10.53839 -10.34706 -10.18812 -9.99347 -9.75306 -9.46200 -8.82530 -8.58265 -8.25280 -8.05307 -5.94027 -3.98764 3.31357 3.38790 3.41734 4.44951 4.47124 5.22981 5.36267 5.37567 5.49295 5.63468 5.77431 5.97838 6.06913 6.11227 6.24312 6.38821 6.47314 6.51499 6.72219 6.87062 6.93976 6.98870 7.19341 7.22173 7.33917 7.43160 7.51502 7.65326 7.78305 8.06719 8.20603 8.52580 9.05052 9.65033 11.12398 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051255 B = 0.010199 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.154151 B = 2744.797786 C = 3124.491400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.047 3.953 3 H 0.026 0.974 4 C -0.508 4.508 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.077 4.077 13 H 0.048 0.952 14 C -0.103 4.103 15 C -0.154 4.154 16 C 0.065 3.935 17 N -0.705 5.705 18 C 0.068 3.932 19 C -0.122 4.122 20 H 0.011 0.989 21 H 0.075 0.925 22 H 0.020 0.980 23 H 0.258 0.742 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.333 0.667 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -3.376 9.553 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 H 0.044 0.956 4 C -0.546 4.546 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.096 4.096 13 H 0.066 0.934 14 C -0.140 4.140 15 C -0.193 4.193 16 C -0.064 4.064 17 N -0.336 5.336 18 C -0.060 4.060 19 C -0.159 4.159 20 H 0.029 0.971 21 H 0.094 0.906 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.052 -2.582 9.436 10.248 hybrid contribution 0.408 -1.376 -1.251 1.903 sum 3.459 -3.958 8.185 9.728 Atomic orbital electron populations 1.21845 0.99245 0.97838 1.00366 1.18737 0.92169 0.95725 0.90550 0.95592 1.21238 1.34409 1.08078 0.90853 0.92666 1.24971 0.95199 0.95135 0.98831 1.69918 1.37764 1.22044 1.23217 0.86687 0.79560 0.79088 0.83302 1.20948 1.21278 1.19963 1.20214 0.95136 0.98614 0.95600 0.93378 1.20572 0.96556 0.99864 0.96997 1.22043 1.00588 0.99054 0.97584 1.21716 0.91221 1.00222 0.93237 1.60252 1.02074 1.51477 1.19755 1.21629 0.90355 0.98420 0.95589 1.21580 1.02113 0.98463 0.93789 0.97057 0.90575 0.96036 0.93196 0.90805 0.92883 0.92621 0.92345 0.92558 0.91160 0.85058 0.95466 0.92152 0.91773 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.69 37.16 0.32 -2.96 16 2 C 0.05 1.15 1.81 -91.77 -0.17 0.99 16 3 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.51 -13.78 7.56 -34.44 -0.26 -14.04 16 5 H 0.06 1.48 6.51 -52.49 -0.34 1.14 16 6 C 0.06 1.65 5.35 -17.82 -0.10 1.56 16 7 N -0.89 -25.77 11.52 55.43 0.64 -25.13 16 8 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.08 -1.58 1.33 -93.31 -0.12 -1.70 16 13 H 0.05 1.02 7.52 -51.93 -0.39 0.63 16 14 C -0.10 -1.97 4.29 -29.42 -0.13 -2.09 16 15 C -0.15 -2.38 5.63 -27.32 -0.15 -2.53 16 16 C 0.06 0.93 6.01 -4.50 -0.03 0.90 16 17 N -0.70 -9.97 6.89 -114.97 -0.79 -10.76 16 18 C 0.07 1.05 6.01 -4.56 -0.03 1.02 16 19 C -0.12 -2.19 4.91 -27.39 -0.13 -2.32 16 20 H 0.01 0.23 6.35 -51.93 -0.33 -0.10 16 21 H 0.08 2.05 6.23 -51.93 -0.32 1.73 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.07 1.56 6.07 -51.93 -0.32 1.25 16 25 H 0.05 1.04 7.52 -51.93 -0.39 0.65 16 26 H 0.06 0.87 7.08 -51.93 -0.37 0.50 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.10 6.58 -51.92 -0.34 0.75 16 30 H 0.33 3.99 8.91 -39.30 -0.35 3.64 16 31 H 0.03 0.43 6.59 -51.93 -0.34 0.08 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.19 7.07 -51.93 -0.37 0.82 16 34 H 0.07 1.31 5.87 -51.93 -0.30 1.01 16 LS Contribution 252.18 15.07 3.80 3.80 Total: -1.00 -28.01 252.18 -7.58 -35.59 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.41 Total: 1.29 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.79 Total: -21.18 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.15 Total: -35.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.01 -7.58 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.773 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds