Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 C 1.50702 * 109.47183 * 240.00127 * 2 1 3 5 5 H 1.07993 * 120.00208 * 245.35842 * 4 2 1 6 6 C 1.37880 * 119.99572 * 65.36172 * 4 2 1 7 7 N 1.31512 * 120.00330 * 355.30066 * 6 4 2 8 8 Si 1.86806 * 119.99727 * 175.30874 * 6 4 2 9 9 H 1.48492 * 109.47413 * 94.99363 * 8 6 4 10 10 H 1.48500 * 109.46945 * 214.99681 * 8 6 4 11 11 H 1.48503 * 109.46845 * 334.99236 * 8 6 4 12 12 C 1.52997 * 109.47040 * 120.00288 * 2 1 3 13 13 H 1.08993 * 108.91917 * 56.40216 * 12 2 1 14 14 C 1.45881 * 108.93827 * 175.10856 * 12 2 1 15 15 C 1.54306 * 112.18580 * 181.72795 * 14 12 2 16 16 C 1.50446 * 108.50123 * 281.45904 * 15 14 12 17 17 N 1.47995 * 112.82429 * 93.72789 * 16 15 14 18 18 C 1.48007 * 114.63049 * 318.09563 * 17 16 15 19 19 C 1.50310 * 112.76760 * 318.11162 * 18 17 16 20 20 H 1.08997 * 109.47065 * 305.22659 * 1 2 3 21 21 H 1.08999 * 109.46949 * 65.22493 * 1 2 3 22 22 H 1.08997 * 109.46940 * 185.22050 * 1 2 3 23 23 H 0.97003 * 120.00010 * 180.02562 * 7 6 4 24 24 H 1.09005 * 108.93949 * 302.42461 * 14 12 2 25 25 H 1.09003 * 108.94323 * 61.02962 * 14 12 2 26 26 H 1.08991 * 109.63461 * 41.16607 * 15 14 12 27 27 H 1.09004 * 109.62977 * 161.76107 * 15 14 12 28 28 H 1.09000 * 108.81861 * 214.59520 * 16 15 14 29 29 H 1.09010 * 108.80998 * 332.87118 * 16 15 14 30 30 H 1.00893 * 111.00126 * 84.83966 * 17 16 15 31 31 H 1.08997 * 108.81246 * 78.95501 * 18 17 16 32 32 H 1.09004 * 108.80763 * 197.33525 * 18 17 16 33 33 H 1.09001 * 109.68944 * 334.02536 * 19 18 17 34 34 H 1.08996 * 109.50293 * 213.47561 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1338 6 6 1.7928 -0.1783 -2.4797 7 7 1.0478 0.8983 -2.6041 8 14 2.5262 -0.9868 -3.9956 9 1 1.5327 -1.9163 -4.5906 10 1 2.8845 0.0571 -4.9891 11 1 3.7448 -1.7441 -3.6121 12 6 2.0400 -0.7213 1.2492 13 1 1.6199 -1.7267 1.2730 14 6 3.4940 -0.8173 1.1801 15 6 4.0861 -1.5730 2.3881 16 6 4.1214 -0.6375 3.5658 17 7 2.9210 -0.7497 4.4242 18 6 1.6440 -0.8716 3.6860 19 6 1.5675 0.0488 2.5001 20 1 -0.3633 0.5928 0.8395 21 1 -0.3633 0.4307 -0.9331 22 1 -0.3633 -1.0234 0.0935 23 1 0.8790 1.2724 -3.4830 24 1 3.7709 -1.3408 0.2649 25 1 3.9140 0.1882 1.1513 26 1 3.4613 -2.4345 2.6232 27 1 5.0977 -1.9039 2.1529 28 1 5.0042 -0.8600 4.1652 29 1 4.1970 0.3863 3.1993 30 1 3.0241 -1.4970 5.0941 31 1 1.5343 -1.8997 3.3409 32 1 0.8226 -0.6394 4.3639 33 1 2.2118 0.9127 2.6635 34 1 0.5377 0.3776 2.3605 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = -37.629815 kcal Electronic energy + Delta-G solvation = -13319.580601 eV Core-core repulsion = 11250.599455 eV Total energy + Delta-G solvation = -2068.981147 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26882 -36.57574 -34.06010 -33.16926 -30.87816 -27.77754 -26.31576 -25.41414 -22.28047 -21.08039 -20.45469 -18.38704 -17.45754 -16.63013 -15.85924 -15.67292 -14.83219 -14.75097 -14.22699 -13.94536 -13.61190 -13.17965 -13.01297 -12.96405 -12.65162 -12.31971 -12.25400 -12.08881 -11.77549 -11.67959 -11.42800 -11.15804 -10.60787 -10.56080 -10.31835 -9.19184 -8.07026 -6.18319 1.38619 1.40128 1.50059 2.43332 3.20882 3.33497 3.86790 4.05714 4.16748 4.30912 4.46881 4.54977 4.65849 4.85397 4.89476 4.94464 4.96496 5.05225 5.16251 5.19285 5.29973 5.39102 5.46863 5.50904 5.60684 5.63519 5.71444 6.03642 6.14947 6.25127 6.43369 6.66140 6.93759 7.48640 8.98490 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051255 B = 0.010199 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.154151 B = 2744.797786 C = 3124.491400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.043 3.957 3 H -0.009 1.009 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C -0.067 4.067 13 H 0.043 0.957 14 C -0.101 4.101 15 C -0.141 4.141 16 C 0.066 3.934 17 N -0.704 5.704 18 C 0.073 3.927 19 C -0.114 4.114 20 H 0.033 0.967 21 H 0.044 0.956 22 H 0.026 0.974 23 H 0.258 0.742 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.350 0.650 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -4.559 10.884 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.024 3.976 3 H 0.009 0.991 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.085 4.085 13 H 0.062 0.938 14 C -0.139 4.139 15 C -0.180 4.180 16 C -0.062 4.062 17 N -0.337 5.337 18 C -0.056 4.056 19 C -0.151 4.151 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.169 0.831 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.790 -3.780 10.786 12.041 hybrid contribution 0.173 -0.980 -1.656 1.932 sum 3.963 -4.760 9.129 11.032 Atomic orbital electron populations 1.21699 0.98872 0.98190 0.99651 1.18733 0.92521 0.94062 0.92248 0.99083 1.21571 1.34053 1.08085 0.91972 0.92778 1.25748 0.95681 0.95812 1.01827 1.70054 1.38915 1.23365 1.23760 0.85697 0.78991 0.78192 0.79727 1.20444 1.21097 1.19178 1.20079 0.95830 0.97900 0.94735 0.93830 1.20501 0.95894 0.99457 0.98008 1.21941 1.01196 0.98765 0.96108 1.21682 0.92471 0.98899 0.93193 1.60194 1.01387 1.52438 1.19655 1.21508 0.91736 0.97459 0.94848 1.21455 1.01391 0.98462 0.93816 0.94854 0.93658 0.95514 0.93285 0.93326 0.94153 0.92291 0.90633 0.89632 0.92806 0.83123 0.95428 0.90422 0.92551 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.69 71.98 0.63 -5.58 16 2 C 0.04 2.17 1.81 -11.54 -0.02 2.15 16 3 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 4 C -0.52 -28.63 7.56 25.60 0.19 -28.44 16 5 H 0.05 2.94 6.51 -2.91 -0.02 2.92 16 6 C 0.01 0.40 5.35 84.66 0.45 0.85 16 7 N -0.92 -54.54 11.52 21.45 0.25 -54.29 16 8 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C -0.07 -2.72 1.33 -12.53 -0.02 -2.74 16 13 H 0.04 1.81 7.52 -2.39 -0.02 1.79 16 14 C -0.10 -3.86 4.29 28.85 0.12 -3.73 16 15 C -0.14 -4.04 5.63 30.21 0.17 -3.87 16 16 C 0.07 1.71 6.01 85.27 0.51 2.22 16 17 N -0.70 -17.63 6.89 -517.67 -3.56 -21.20 16 18 C 0.07 2.05 6.01 85.22 0.51 2.56 16 19 C -0.11 -3.96 4.91 30.17 0.15 -3.81 16 20 H 0.03 1.44 6.35 -2.39 -0.02 1.42 16 21 H 0.04 2.49 6.23 -2.39 -0.01 2.48 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.05 2.07 6.07 -2.38 -0.01 2.05 16 25 H 0.04 1.61 7.52 -2.39 -0.02 1.59 16 26 H 0.06 1.67 7.08 -2.39 -0.02 1.65 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.58 6.58 -2.38 -0.02 1.57 16 30 H 0.35 6.99 8.91 -89.70 -0.80 6.19 16 31 H 0.03 0.78 6.59 -2.39 -0.02 0.77 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 2.05 7.07 -2.39 -0.02 2.03 16 34 H 0.07 2.38 5.87 -2.39 -0.01 2.36 16 Total: -1.00 -60.22 252.18 1.68 -58.54 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.27 Total: 11.00 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 2.70 Total: -40.39 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -3.32 Total: -75.49 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.22 1.68 -58.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.908 kcal (2) G-P(sol) polarization free energy of solvation -60.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds