Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47588 * 2 1 4 4 C 1.46905 * 110.99664 * 305.68398 * 3 2 1 5 5 C 1.53001 * 109.47128 * 293.37977 * 4 3 2 6 6 C 1.46900 * 111.00308 * 69.63811 * 3 2 1 7 7 H 1.08996 * 109.47649 * 170.51167 * 6 3 2 8 8 C 1.50697 * 109.46998 * 50.50119 * 6 3 2 9 9 H 1.08003 * 120.00399 * 298.43490 * 8 6 3 10 10 C 1.37879 * 119.99565 * 118.43874 * 8 6 3 11 11 N 1.31517 * 120.00052 * 354.30502 * 10 8 6 12 12 Si 1.86800 * 119.99712 * 174.30727 * 10 8 6 13 13 H 1.48495 * 109.47443 * 90.00132 * 12 10 8 14 14 H 1.48511 * 109.46881 * 209.99706 * 12 10 8 15 15 H 1.48497 * 109.47368 * 329.99614 * 12 10 8 16 16 C 1.53008 * 109.46969 * 290.50614 * 6 3 2 17 17 C 1.52998 * 117.51686 * 118.89415 * 16 6 3 18 18 C 1.52995 * 117.49993 * 187.52711 * 16 6 3 19 19 H 1.09009 * 109.46856 * 289.07801 * 1 2 3 20 20 H 1.08992 * 109.46929 * 49.07779 * 1 2 3 21 21 H 1.09001 * 109.47473 * 169.08387 * 1 2 3 22 22 H 1.09005 * 109.46987 * 239.99762 * 2 1 3 23 23 H 1.09002 * 109.47200 * 120.00138 * 2 1 3 24 24 H 1.08995 * 109.46880 * 53.38084 * 4 3 2 25 25 H 1.09003 * 109.46715 * 173.38008 * 4 3 2 26 26 H 1.09002 * 109.46835 * 306.96108 * 5 4 3 27 27 H 1.08998 * 109.47020 * 66.96217 * 5 4 3 28 28 H 1.08996 * 109.46830 * 186.97001 * 5 4 3 29 29 H 0.97001 * 119.99912 * 180.02562 * 11 10 8 30 30 H 1.09003 * 115.54753 * 333.20084 * 16 6 3 31 31 H 1.09002 * 117.50287 * 214.96795 * 17 16 6 32 32 H 1.09002 * 117.49994 * 359.97438 * 17 16 6 33 33 H 1.08996 * 117.50102 * 359.97379 * 18 16 6 34 34 H 1.09004 * 117.50027 * 144.99633 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4410 2.1479 -1.1140 5 6 1.9630 1.5903 -2.4397 6 6 1.7454 2.0404 1.2857 7 1 2.2619 2.9995 1.3221 8 6 2.2331 1.1640 2.4105 9 1 1.8125 0.1789 2.5489 10 6 3.2163 1.6198 3.2629 11 7 3.8073 2.7712 3.0292 12 14 3.7088 0.6020 4.7498 13 1 4.8093 -0.3218 4.3748 14 1 4.1681 1.5036 5.8368 15 1 2.5405 -0.1850 5.2200 16 6 0.2392 2.2665 1.4317 17 6 -0.4677 1.5839 2.6044 18 6 -0.2381 3.0965 2.6251 19 1 -0.3633 0.3359 0.9713 20 1 -0.3633 0.6731 -0.7765 21 1 -0.3634 -1.0091 -0.1946 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.3547 2.0631 -1.0868 25 1 1.7261 3.1961 -1.0233 26 1 3.0524 1.5605 -2.4175 27 1 1.5749 0.5826 -2.5880 28 1 1.6338 2.2306 -3.2580 29 1 4.4992 3.0917 3.6287 30 1 -0.3144 2.3632 0.4977 31 1 -1.4863 1.2316 2.4420 32 1 0.1402 0.9731 3.2719 33 1 0.5207 3.4810 3.3064 34 1 -1.1058 3.7393 2.4762 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 39.326898 kcal Electronic energy + Delta-G solvation = -13623.785362 eV Core-core repulsion = 11558.141308 eV Total energy + Delta-G solvation = -2065.644053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.56184 -35.03662 -32.51581 -30.42903 -29.02036 -25.84659 -24.08318 -22.35165 -21.45411 -19.74017 -18.49986 -16.09561 -15.37411 -14.81712 -14.70325 -13.90970 -13.37979 -12.88838 -12.28345 -12.14502 -11.73237 -11.60863 -11.41130 -10.93967 -10.77777 -10.62746 -10.49576 -10.44208 -10.26149 -9.99610 -9.42717 -9.17879 -9.01906 -8.52623 -8.31362 -6.91703 -6.01716 -4.04236 3.30359 3.37695 3.39697 4.41217 4.89427 5.07058 5.51962 5.66946 5.83931 5.92725 5.99935 6.07247 6.12658 6.16970 6.22954 6.35352 6.39198 6.53235 6.57904 6.64933 6.72145 6.80631 6.92494 7.08910 7.20882 7.27771 7.32477 7.65621 7.84628 8.12770 8.63318 8.75447 9.06099 9.58347 11.06629 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033031 B = 0.014091 C = 0.012577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.482822 B = 1986.592786 C = 2225.806822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.058 3.942 3 N -0.520 5.520 4 C 0.038 3.962 5 C -0.144 4.144 6 C 0.222 3.778 7 H 0.083 0.917 8 C -0.497 4.497 9 H 0.058 0.942 10 C 0.072 3.928 11 N -0.884 5.884 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.166 4.166 17 C -0.177 4.177 18 C -0.181 4.181 19 H 0.086 0.914 20 H 0.046 0.954 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 -1.929 -4.304 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.071 4.071 3 N -0.243 5.243 4 C -0.091 4.091 5 C -0.202 4.202 6 C 0.116 3.884 7 H 0.100 0.900 8 C -0.535 4.535 9 H 0.076 0.924 10 C -0.131 4.131 11 N -0.522 5.522 12 Si 0.715 3.285 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.186 4.186 17 C -0.214 4.214 18 C -0.219 4.219 19 H 0.104 0.896 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.103 0.897 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.858 -1.803 -4.305 6.737 hybrid contribution -0.695 -0.475 0.869 1.210 sum -5.553 -2.278 -3.436 6.916 Atomic orbital electron populations 1.22975 1.00152 0.99790 1.03763 1.21950 0.91485 0.92387 1.01241 1.62993 1.56338 1.01203 1.03740 1.22147 0.96620 0.98175 0.92112 1.21771 1.01857 0.99981 0.96552 1.19266 0.86332 0.97432 0.85384 0.89959 1.20923 1.20181 1.01545 1.10853 0.92379 1.24971 0.95431 0.94961 0.97761 1.69911 1.25094 1.19947 1.37242 0.86685 0.78929 0.80189 0.82737 1.20621 1.21282 1.19854 1.23619 1.01115 1.03037 0.90868 1.22953 0.98837 0.95382 1.04192 1.22763 1.01840 0.93466 1.03789 0.89589 0.93510 0.94715 0.93777 0.89713 0.95240 0.92075 0.92235 0.93548 0.93824 0.92893 0.90490 0.91915 0.87216 0.88773 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.78 8.37 37.16 0.31 -3.47 16 2 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 3 N -0.52 -11.54 4.82 -228.03 -1.10 -12.64 16 4 C 0.04 0.72 4.74 -3.82 -0.02 0.70 16 5 C -0.14 -2.34 9.67 37.16 0.36 -1.98 16 6 C 0.22 5.37 2.56 -68.86 -0.18 5.20 16 7 H 0.08 2.30 6.93 -51.93 -0.36 1.94 16 8 C -0.50 -12.87 5.37 -34.44 -0.18 -13.06 16 9 H 0.06 1.50 5.86 -52.48 -0.31 1.19 16 10 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 11 N -0.88 -25.14 12.62 55.43 0.70 -24.44 16 12 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 C -0.17 -3.52 3.40 -90.62 -0.31 -3.83 16 17 C -0.18 -3.57 7.62 -26.73 -0.20 -3.77 16 18 C -0.18 -3.71 10.15 -26.73 -0.27 -3.98 16 19 H 0.09 1.65 3.65 -51.92 -0.19 1.46 16 20 H 0.05 0.82 5.39 -51.93 -0.28 0.54 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.83 6.93 -51.93 -0.36 0.47 16 23 H 0.08 1.88 5.78 -51.93 -0.30 1.58 16 24 H 0.03 0.55 4.10 -51.93 -0.21 0.33 16 25 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.72 7.04 -51.93 -0.37 0.36 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.08 1.56 5.14 -51.93 -0.27 1.29 16 31 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 32 H 0.11 2.43 6.10 -51.93 -0.32 2.11 16 33 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 253.09 15.07 3.81 3.81 Total: -1.00 -26.93 253.09 -7.26 -34.18 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.04 Total: 4.40 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -0.61 Total: -21.19 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.40 Total: -37.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.93 -7.26 -34.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.511 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds