Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47044 * 2 1 4 4 C 1.50701 * 109.46643 * 239.99797 * 2 1 3 5 5 H 1.07997 * 119.99790 * 239.99621 * 4 2 1 6 6 C 1.37875 * 120.00143 * 60.00508 * 4 2 1 7 7 N 1.31523 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00398 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47200 * 89.99244 * 8 6 4 10 10 H 1.48500 * 109.47206 * 209.99891 * 8 6 4 11 11 H 1.48504 * 109.46692 * 329.99684 * 8 6 4 12 12 C 1.52994 * 109.47026 * 120.00001 * 2 1 3 13 13 C 1.53124 * 109.52564 * 299.68100 * 12 2 1 14 14 C 1.53035 * 109.27794 * 182.44326 * 13 12 2 15 15 N 1.46844 * 109.52494 * 59.18054 * 14 13 12 16 16 C 1.46897 * 111.00090 * 174.16001 * 15 14 13 17 17 C 1.46854 * 111.19703 * 298.25280 * 15 14 13 18 18 C 1.53037 * 109.51886 * 61.74789 * 17 15 14 19 19 H 1.08996 * 109.47044 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46839 * 300.00281 * 1 2 3 21 21 H 1.08993 * 109.47187 * 59.99787 * 1 2 3 22 22 H 0.96996 * 119.99963 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.58045 * 59.84177 * 12 2 1 24 24 H 1.08999 * 109.50059 * 302.38272 * 13 12 2 25 25 H 1.08993 * 109.49981 * 62.49919 * 13 12 2 26 26 H 1.09002 * 109.46466 * 299.16376 * 14 13 12 27 27 H 1.09002 * 109.46192 * 179.19659 * 14 13 12 28 28 H 1.09004 * 109.47425 * 184.20891 * 16 15 14 29 29 H 1.08999 * 109.47215 * 304.20975 * 16 15 14 30 30 H 1.09004 * 109.47700 * 64.20982 * 16 15 14 31 31 H 1.08994 * 109.46310 * 301.73015 * 17 15 14 32 32 H 1.09004 * 109.45830 * 181.75702 * 17 15 14 33 33 H 1.09000 * 109.50480 * 180.88135 * 18 17 15 34 34 H 1.09002 * 109.53848 * 60.77851 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4123 10 1 2.4871 -0.1403 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 6 2.0400 -0.7212 1.2492 13 6 1.5368 0.0043 2.5003 14 6 2.0999 -0.6854 3.7450 15 7 3.5673 -0.6592 3.6992 16 6 4.1424 -1.1887 4.9428 17 6 4.0752 -1.3906 2.5314 18 6 3.5713 -0.7219 1.2504 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.7082 1.1609 -3.4844 23 1 1.6753 -1.7484 1.2524 24 1 1.8693 1.0421 2.4775 25 1 0.4478 -0.0291 2.5269 26 1 1.7558 -1.7193 3.7744 27 1 1.7550 -0.1626 4.6371 28 1 5.2275 -1.0890 4.9128 29 1 3.7496 -0.6293 5.7918 30 1 3.8771 -2.2408 5.0469 31 1 3.7219 -2.4211 2.5664 32 1 5.1652 -1.3799 2.5421 33 1 3.9355 -1.2741 0.3841 34 1 3.9357 0.3045 1.2073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -18.822364 kcal Electronic energy + Delta-G solvation = -13165.478717 eV Core-core repulsion = 11097.313123 eV Total energy + Delta-G solvation = -2068.165595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.64419 -35.10837 -32.28426 -30.37763 -29.47626 -25.80121 -25.13780 -22.56139 -22.22669 -19.77454 -18.73403 -16.17583 -15.44605 -14.68478 -14.47749 -14.29491 -13.18271 -13.10852 -12.83904 -12.42309 -11.98301 -11.78531 -11.55417 -11.33334 -10.93339 -10.66037 -10.59600 -10.43244 -10.15679 -9.96972 -9.83410 -9.39928 -8.84573 -8.55427 -8.24006 -8.02027 -5.90142 -3.95634 3.34014 3.40852 3.43581 4.26894 4.49466 5.28489 5.38047 5.40768 5.48368 5.57886 5.73511 5.82641 5.91480 5.96865 6.03847 6.20713 6.31269 6.52310 6.65900 6.72533 6.95855 6.99504 7.09007 7.20603 7.35762 7.40954 7.46075 7.52036 7.82257 8.11501 8.25518 8.56272 9.08072 9.68383 11.15718 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055019 B = 0.009412 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.793853 B = 2974.348477 C = 3348.774138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 H 0.025 0.975 4 C -0.506 4.506 5 H 0.054 0.946 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.076 4.076 13 C -0.113 4.113 14 C 0.058 3.942 15 N -0.543 5.543 16 C 0.026 3.974 17 C 0.055 3.945 18 C -0.101 4.101 19 H 0.021 0.979 20 H 0.009 0.991 21 H 0.079 0.921 22 H 0.258 0.742 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -3.208 10.417 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.031 3.969 3 H 0.043 0.957 4 C -0.544 4.544 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.095 4.095 13 C -0.151 4.151 14 C -0.070 4.070 15 N -0.268 5.268 16 C -0.123 4.123 17 C -0.073 4.073 18 C -0.139 4.139 19 H 0.040 0.960 20 H 0.028 0.972 21 H 0.098 0.902 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.411 -2.606 10.230 11.094 hybrid contribution 0.036 -1.366 -0.790 1.578 sum 3.447 -3.972 9.441 10.807 Atomic orbital electron populations 1.21842 0.99150 0.98622 0.99929 1.18664 0.92178 0.95605 0.90461 0.95678 1.21233 1.30529 1.11998 0.90663 0.92735 1.24968 0.95299 0.95028 0.98857 1.69898 1.37134 1.23084 1.23028 0.86686 0.79214 0.79432 0.83192 1.20893 1.21355 1.20007 1.21235 0.94129 0.98752 0.95341 1.21738 0.99519 1.00102 0.93733 1.22131 0.86949 0.98648 0.99260 1.61952 1.07478 1.55058 1.02329 1.22329 1.00101 0.97225 0.92613 1.22217 0.98875 0.94873 0.91295 1.21563 0.96720 1.01003 0.94592 0.95967 0.97215 0.90233 0.93221 0.93258 0.91725 0.91801 0.95597 0.91805 0.91794 0.91890 0.96285 0.95627 0.91741 0.90841 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.63 37.16 0.32 -3.05 16 2 C 0.05 1.23 1.90 -91.77 -0.17 1.06 16 3 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.51 -13.84 7.86 -34.44 -0.27 -14.11 16 5 H 0.05 1.47 6.72 -52.49 -0.35 1.12 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.08 -1.58 1.80 -90.49 -0.16 -1.75 16 13 C -0.11 -2.06 4.96 -26.65 -0.13 -2.19 16 14 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 15 N -0.54 -8.56 4.91 -242.96 -1.19 -9.75 16 16 C 0.03 0.32 9.59 60.06 0.58 0.90 16 17 C 0.05 0.90 5.46 -3.83 -0.02 0.88 16 18 C -0.10 -1.97 5.08 -26.65 -0.14 -2.10 16 19 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 20 H 0.01 0.20 6.50 -51.93 -0.34 -0.14 16 21 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 1.13 6.58 -51.93 -0.34 0.79 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.07 1.51 6.71 -51.93 -0.35 1.16 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 261.59 15.07 3.94 3.94 Total: -1.00 -28.40 261.59 -7.66 -36.05 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.90 Total: -3.50 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -0.11 Total: -17.93 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.57 Total: -35.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.40 -7.66 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.231 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds